[1] "2025-04-30 02:40:33 MDT" [1] "1703" "170405" "d095" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170405a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 76020 63 [1] 76020 [1] 76020 [1] "testing skipping spike filter" [1] 76020 [1] 76020 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:40:37 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.096, ave o2scale2 = 0.88" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "58 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.096, ave o2scale2 = 0.88" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "58 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:40:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:40:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:40:51 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:40:52 MDT" [1] "reading in recalculated plot titles" [1] "Removed 58 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 232 row(s) with variable TFCELL" [1] "TEMP: 976 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:40:55 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.467 co2off = 375.91 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.94 minutes" [1] "Average Cal: 7.84 minutes" [1] "Shortest Cal: 6.83 minutes" [1] "Longest Cal: 7.95 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 122 129 0.09668171 0.1021952 0.1002261 3 5.382073 312.7474 3 4 130 137 0.10298281 0.1085050 0.1065334 3 8.103010 148.2372 4 3 138 145 0.10929262 0.1148062 0.1144123 3 4.597448 307.5658 6 4 386 393 0.30492133 0.3104428 0.3084737 2 8.145021 155.3258 7 2 394 401 0.31123047 0.3167526 0.3147777 2 5.413604 315.8334 10 2 650 657 0.51315984 0.5186821 0.5167113 3 5.383729 315.4495 11 4 658 665 0.51946979 0.5249834 0.5230142 3 8.135281 153.1206 12 3 666 673 0.52577422 0.5312933 0.5308994 3 4.607563 300.9091 14 4 886 892 0.72215622 0.7268992 0.7253129 2 7.770750 152.7167 15 2 893 900 0.72768678 0.7332002 0.7312311 2 5.006729 317.5054 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9171047 1.140388 -8.706593e-04 1.021690 0.002821629 2.487659 3 0.9169880 1.140245 2.619678e-03 4.569214 0.005850803 9.869993 4 0.9169513 1.140185 9.808515e-04 3.785488 0.002134324 3.035986 6 0.9161697 1.139362 6.927213e-05 1.951027 0.001446260 5.534852 7 0.9162222 1.139417 -1.343927e-03 3.225426 0.002939140 7.634858 10 0.9135601 1.136789 3.660192e-03 2.032798 0.008256027 5.059261 11 0.9135091 1.136731 1.802673e-03 3.155832 0.003890242 7.141875 12 0.9136952 1.136940 7.336617e-04 1.951939 0.001679844 1.565525 14 0.9092319 1.132565 -2.946777e-03 1.058438 0.005364998 5.779068 15 0.9090380 1.132482 1.218614e-03 1.496768 0.002996265 5.769509 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 373.272 co2l1 = 4.45 co2l0 = -2.033" [1] "co2l0 = -158.77 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "35 out of 280 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "245 out of 842 1-min values rejected as stack air" [1] "245 out of 842 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"