[1] "2025-04-30 02:40:09 MDT" [1] "1703" "170404" "d094" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170404a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 77780 63 [1] 77780 [1] 77780 [1] "testing skipping spike filter" [1] 77780 [1] 77780 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:40:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.096, ave o2scale2 = 0.881" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.096, ave o2scale2 = 0.881" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "17 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:40:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:40:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:40:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:40:26 MDT" [1] "reading in recalculated plot titles" [1] "Removed 17 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1275 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:40:28 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.461 co2off = 372.83 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.35 minutes" [1] "Shortest Cal: 4.56 minutes" [1] "Longest Cal: 10.23 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 210 218 0.1512833 0.1569709 0.1548379 2 8.141598 151.7793 0.9119143 3 2 219 227 0.1576821 0.1633773 0.1612433 2 5.417375 315.8225 0.9118384 5 2 503 511 0.3597947 0.3654913 0.3633546 3 5.389304 319.1799 0.9108229 6 4 512 520 0.3662040 0.3719045 0.3697657 3 8.113045 157.2116 0.9107101 7 3 521 529 0.3726158 0.3783038 0.3775929 3 4.564920 305.6529 0.9105782 9 4 795 803 0.5681045 0.5738095 0.5716731 2 8.145027 153.5800 0.9112736 10 2 804 812 0.5745215 0.5802256 0.5780818 2 5.407250 318.5710 0.9114731 13 3 876 880 0.6845053 0.6876731 0.6884651 3 4.550687 319.5444 0.9123115 14 2 881 890 0.6884651 0.6955641 0.6928023 3 5.362242 336.8360 0.9124158 15 4 891 900 0.6963635 0.7034612 0.7006984 3 8.125219 160.5685 0.9123572 16 5 901 910 0.7042489 0.7113551 0.7101736 NA 7.089937 200.4918 0.9126371 19 4 1135 1142 0.8889366 0.8944500 0.8924809 2 8.146615 156.7833 0.9150483 20 2 1143 1150 0.8952436 0.9008895 0.8989182 2 5.411625 316.4565 0.9153045 jfcv2 co2slp o2slp co2sd o2sd 2 1.134456 0.0015064325 2.7503629 0.0040998058 6.193914 3 1.134461 0.0004243034 3.8033119 0.0010986497 9.504885 5 1.133706 -0.0012297902 3.0723741 0.0027807065 8.180887 6 1.133502 -0.0016342165 2.6986673 0.0037092779 6.797565 7 1.133508 -0.0011401629 -1.6824490 0.0029892852 1.767915 9 1.134202 -0.0016403845 1.0012089 0.0038535794 2.538449 10 1.134359 -0.0004887378 3.7830095 0.0018157299 9.923708 13 1.135835 -0.0007439110 4.1117888 0.0008592329 9.948051 14 1.136008 0.0001633126 4.5371388 0.0013539119 17.802358 15 1.136046 0.0028776228 0.7743538 0.0080807863 8.005919 16 1.136198 0.0023146447 -0.7720010 0.0018561553 1.677850 19 1.138096 -0.0006785785 -0.2324236 0.0024400361 6.639540 20 1.138358 -0.0009594585 2.8978603 0.0027354730 6.733789 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.903 co2l1 = 4.442 co2l0 = 0.873" [1] "co2l0 = -159.37 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "63 out of 315 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "252 out of 1096 1-min values rejected as stack air" [1] "149 out of 886 Line 1 1-min values rejected as stack air" [1] "103 out of 210 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"