[1] "2025-04-30 02:39:36 MDT" [1] "1703" "170403" "d093" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170403a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:39:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.088, ave o2scale2 = 0.876" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.088, ave o2scale2 = 0.876" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "1 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:39:40 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:39:40 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:39:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:40:00 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1401 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:40:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.496 co2off = 372.46 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 8.19 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 155 163 0.1115614 0.1172499 0.1151164 3 5.443009 306.6664 0.9241191 3 4 164 172 0.1179612 0.1236584 0.1215239 3 8.168259 151.2542 0.9239427 4 3 173 181 0.1243696 0.1300676 0.1293514 3 4.655589 303.9590 0.9238224 6 4 447 455 0.3194231 0.3251157 0.3229815 2 8.195937 157.1859 0.9212138 7 2 456 464 0.3258270 0.3315321 0.3293908 2 5.469723 318.6808 0.9211620 10 2 739 747 0.5274424 0.5331464 0.5310097 3 5.468518 316.2837 0.9188911 11 4 748 756 0.5338583 0.5395522 0.5374162 3 8.203946 137.7024 0.9187930 12 3 757 765 0.5402782 0.5459702 0.5452587 3 4.686473 299.4014 0.9190287 14 4 1030 1038 0.7354275 0.7411310 0.7389897 2 8.118955 157.7773 0.9159013 15 2 1039 1047 0.7418432 0.7475356 0.7454013 2 5.390884 325.5434 0.9156678 17 2 1322 1330 0.9433895 0.9490819 0.9469471 3 5.385152 315.4970 0.9143016 18 4 1331 1339 0.9497991 0.9554905 0.9533561 3 8.113214 148.6383 0.9141876 20 3 1349 1357 0.9626163 0.9683078 0.9675964 3 4.563366 301.7253 0.9142141 jfcv2 co2slp o2slp co2sd o2sd 2 1.146212 3.443949e-03 -4.1011165 0.007657583 20.790652 3 1.146118 1.394722e-03 3.5690799 0.004524734 7.933954 4 1.145847 1.170852e-03 1.7668356 0.003012314 2.000503 6 1.143211 4.466372e-04 2.2995437 0.001109852 7.148663 7 1.143236 -4.536740e-04 1.3741731 0.001065472 5.356971 10 1.141124 1.412863e-03 3.5047877 0.003308707 8.342342 11 1.141076 1.859846e-03 8.4466740 0.004205563 20.082980 12 1.141214 -2.649350e-03 -3.3485756 0.006045817 3.811061 14 1.138164 3.442871e-05 1.2016002 0.001127147 12.267193 15 1.137975 2.156722e-04 6.9259204 0.002519566 16.395865 17 1.136737 -1.707867e-03 3.4191510 0.003917751 7.763629 18 1.136688 -8.214056e-04 0.6017187 0.002402217 2.439377 20 1.136845 -1.213610e-03 -1.3406685 0.005845162 1.714696 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.623 co2l1 = 4.463 co2l0 = -0.383" [1] "co2l0 = -157.78 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "114 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "116 out of 1209 1-min values rejected as stack air" [1] "116 out of 1209 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"