[1] "2025-04-30 02:39:08 MDT" [1] "1703" "170402" "d092" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170402a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 76080 63 [1] 76080 [1] 76080 [1] "testing skipping spike filter" [1] 76080 [1] 76080 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:39:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.083, ave o2scale2 = 0.872" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "8 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.083, ave o2scale2 = 0.872" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:39:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:39:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:39:27 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:39:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1258 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:39:31 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.494 co2off = 375.75 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.95 minutes" [1] "Average Cal: 7.87 minutes" [1] "Shortest Cal: 6.81 minutes" [1] "Longest Cal: 7.97 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 87 94 0.07090521 0.07642303 0.07445102 2 8.136375 149.6275 3 2 95 102 0.07721071 0.08274572 0.08077231 2 5.427313 312.6008 6 2 347 354 0.27915799 0.28467098 0.28270206 3 5.492583 314.5320 7 4 355 362 0.28545854 0.29098874 0.28901287 3 8.169677 152.5667 8 3 363 370 0.29177630 0.29728947 0.29689566 3 4.616271 300.8022 10 4 611 618 0.48737532 0.49290613 0.49093049 2 8.139229 167.8864 11 2 619 626 0.49369378 0.49920720 0.49723814 2 5.428365 312.6463 13 2 875 882 0.69557633 0.70110700 0.69912857 3 5.435010 321.8591 14 4 883 889 0.70268220 0.70740790 0.70583264 3 8.155400 143.8101 16 3 898 905 0.71450503 0.72002925 0.71963426 3 4.632708 294.6892 18 4 1137 1144 0.90380182 0.90933108 0.90734951 2 8.160594 149.9796 19 2 1145 1152 0.91012882 0.91564213 0.91367306 2 5.444562 314.5579 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9197542 1.143216 1.716963e-03 2.62195094 0.0037032503 5.91400906 3 0.9196866 1.143137 1.050944e-03 2.70591568 0.0038066554 6.78739110 6 0.9228130 1.146052 -2.925555e-03 2.19941805 0.0065304176 5.89686297 7 0.9226934 1.145878 -3.972637e-03 4.14967676 0.0084897380 8.91423781 8 0.9226097 1.145769 -2.830979e-03 0.04839646 0.0060999061 0.03881284 10 0.9242512 1.147292 1.773633e-03 11.68016648 0.0039254113 27.15542115 11 0.9242836 1.147349 1.440617e-03 5.48135617 0.0031093148 13.12763855 13 0.9258660 1.148301 8.975755e-04 -2.65408878 0.0020846975 13.05782131 14 0.9256253 1.148113 -5.510647e-04 7.36338510 0.0018846626 15.52539403 16 0.9258092 1.148183 -9.088351e-05 -5.46899089 0.0006515207 4.39921738 18 0.9243658 1.146723 1.859372e-03 2.95471779 0.0051388152 7.27445615 19 0.9245003 1.146899 -1.753949e-03 3.78602777 0.0039898308 8.13869115 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.524 co2l1 = 4.478 co2l0 = 2.846" [1] "co2l0 = -159.62 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "76 out of 90 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "14 out of 1095 1-min values rejected as stack air" [1] "14 out of 1095 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"