[1] "2025-04-30 02:38:43 MDT" [1] "1703" "170401" "d091" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170401a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 78912 63 [1] 78912 [1] 78912 [1] "testing skipping spike filter" [1] 78912 [1] 78912 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:38:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.1, ave o2scale2 = 0.881" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "30 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.1, ave o2scale2 = 0.881" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "30 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:38:48 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:38:48 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:38:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:39:00 MDT" [1] "reading in recalculated plot titles" [1] "Removed 30 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 4 row(s) with variable TFCELL" [1] "TEMP: 1279 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:39:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.455 co2off = 369.47 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.08 minutes" [1] "Average Cal: 7.99 minutes" [1] "Shortest Cal: 3.43 minutes" [1] "Longest Cal: 10.21 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 107 115 0.07678365 0.0824772 0.08034077 2 8.165911 143.3676 3 2 116 124 0.08318828 0.0888759 0.08674323 2 5.414875 318.0038 5 2 395 403 0.28466293 0.2903558 0.28822097 3 5.432241 314.0752 6 4 404 412 0.29107289 0.2967661 0.29463148 3 8.182250 161.5791 8 3 421 429 0.30389216 0.3095834 0.30887205 3 4.637330 300.8509 10 2 596 599 0.45871768 0.4611021 0.46070832 2 5.407812 333.1547 11 4 600 609 0.46188967 0.4689783 0.46622156 2 8.142062 162.1201 12 5 610 619 0.46977341 0.4768633 0.47568185 NA 7.028938 202.2965 14 4 843 850 0.65442509 0.6599558 0.65797592 2 8.159438 151.2641 15 2 851 858 0.66074343 0.6662569 0.66428778 2 5.419052 313.5710 17 2 1106 1113 0.86262636 0.8681484 0.86617863 3 5.423125 314.0973 18 4 1114 1121 0.86894317 0.8744668 0.87249773 3 8.148740 153.9718 19 3 1122 1129 0.87525443 0.8807852 0.88039144 3 4.616875 300.9537 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9065272 1.133338 -2.783951e-03 1.5123526 0.0062682917 9.7052313 3 0.9062083 1.133042 1.526430e-04 7.4229156 0.0016369751 16.6274253 5 0.9034396 1.130133 1.792872e-03 4.9129946 0.0042726767 11.6943640 6 0.9034236 1.130161 5.555042e-04 7.6009662 0.0015095184 17.8571580 8 0.9034904 1.130638 7.081543e-04 -3.6640751 0.0021233800 3.7571459 10 0.9061667 1.132543 -2.975644e-03 6.4688005 0.0023864854 5.1880194 11 0.9064534 1.133101 -1.754216e-03 0.1625101 0.0050409041 5.6215791 12 0.9068093 1.133574 9.919177e-04 1.8609157 0.0007954951 4.5261732 14 0.9112271 1.136932 1.771838e-03 0.1350966 0.0042178934 2.3891107 15 0.9115458 1.137250 5.085359e-04 3.0126842 0.0038821339 7.0484488 17 0.9166041 1.140885 4.381787e-04 4.0573168 0.0024555422 8.7046376 18 0.9167478 1.140998 6.140465e-05 2.8499691 0.0012998898 6.2012344 19 0.9171997 1.141453 -2.768715e-04 0.6423268 0.0017441868 0.5151313 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.792 co2l1 = 4.442 co2l0 = -0.252" [1] "co2l0 = -159.34 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "5 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1110 1-min values rejected as stack air" [1] "0 out of 1110 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"