[1] "2025-04-30 02:38:11 MDT" [1] "1703" "170331" "d090" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170331a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:38:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.09, ave o2scale2 = 0.873" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "63 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.09, ave o2scale2 = 0.873" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "63 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:38:15 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:38:15 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:38:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:38:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 63 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1340 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:38:39 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.462 co2off = 378.48 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 7.98 minutes" [1] "Shortest Cal: 6.15 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 52 60 0.03706898 0.04277341 0.04063250 2 5.409116 322.3642 4 3 69 77 0.05629253 0.06198950 0.06127387 2 4.632500 300.3443 6 4 332 340 0.24491632 0.25061094 0.24847259 2 8.132009 152.2765 7 2 341 349 0.25132720 0.25701536 0.25488230 2 5.419750 316.3402 9 2 596 602 0.45281105 0.45708163 0.45565778 3 5.405425 313.0946 10 4 603 611 0.45921722 0.46491756 0.46278134 3 8.136241 146.2040 11 3 612 619 0.46562917 0.47132737 0.47096898 3 4.594923 295.8534 13 4 868 876 0.66079719 0.66649083 0.66435556 2 8.155071 149.7732 14 2 877 885 0.66720289 0.67290489 0.67076503 2 5.418116 312.7109 17 2 1158 1166 0.86878773 0.87448979 0.87235327 3 5.417839 303.6600 18 4 1167 1175 0.87520217 0.88089711 0.87876069 3 8.154857 148.7862 19 3 1176 1184 0.88161687 0.88730964 0.88659799 3 4.610813 303.9905 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9259208 1.155523 0.0010482149 2.4685612 0.002412918 8.435435 4 0.9258949 1.155409 0.0001322894 -3.0537734 0.001244258 3.144817 6 0.9250147 1.153800 0.0008970401 1.7000385 0.002062951 3.973560 7 0.9248204 1.153668 -0.0005929888 0.5439834 0.001367403 3.791468 9 0.9161333 1.143863 0.0005122059 -2.3706670 0.001102554 9.419338 10 0.9157370 1.143547 0.0012255481 5.1863636 0.002949538 14.208319 11 0.9156266 1.143444 -0.0021812517 1.7723268 0.005508981 1.293536 13 0.9109509 1.138657 -0.0015550242 1.1615570 0.003599303 6.011569 14 0.9111404 1.138955 0.0013796939 2.2091386 0.003549029 7.834513 17 0.9114630 1.138309 -0.0005362923 -1.3290263 0.003011881 5.004390 18 0.9110723 1.138165 -0.0000894744 1.6189595 0.002581160 10.369250 19 0.9111875 1.137982 -0.0018058831 6.7128315 0.004191851 6.973770 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.609 co2l1 = 4.482 co2l0 = 0.584" [1] "co2l0 = -157.13 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "83 out of 205 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "122 out of 1161 1-min values rejected as stack air" [1] "122 out of 1161 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"