[1] "2025-04-30 02:37:38 MDT" [1] "1703" "170330" "d089" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170330a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:37:42 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.084, ave o2scale2 = 0.871" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "22 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.084, ave o2scale2 = 0.871" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:37:42 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:37:42 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:38:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:38:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1381 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:38:06 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.472 co2off = 376.61 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 7.73 minutes" [1] "Shortest Cal: 3.07 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 4 0.0008729167 0.003006829 0.002651128 2 8.167219 133.2652 2 2 5 13 0.0037182292 0.009407639 0.007274157 2 5.437375 303.0397 4 2 279 287 0.2053762731 0.211077170 0.208935148 3 5.442786 318.0409 5 4 288 296 0.2117886863 0.217480006 0.215345420 3 8.165080 154.3612 6 3 297 305 0.2181918403 0.223887124 0.223175772 3 4.619429 294.6885 8 4 570 577 0.4140087384 0.418989236 0.417210831 2 8.148917 147.2341 9 2 578 586 0.4197008391 0.425397714 0.423263972 2 5.411652 312.7004 12 2 858 866 0.6212139468 0.626905035 0.624770697 3 5.443884 314.0569 13 4 867 875 0.6276164931 0.633317622 0.631179030 3 8.163161 146.4891 14 3 876 884 0.6340292245 0.639719763 0.639008652 3 4.626205 298.6699 16 4 1146 1154 0.8291255787 0.834828443 0.832693961 2 8.131616 150.6834 17 2 1155 1163 0.8355399016 0.841240133 0.839097594 2 5.396643 319.3194 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 0.9237110 1.145497 0.0005490930 -0.04132401 0.0003977476 0.02993396 2 0.9235306 1.145373 0.0009437481 1.77372923 0.0032216310 21.55468337 4 0.9187774 1.142558 -0.0017247679 3.80911262 0.0039197445 9.31419889 5 0.9185716 1.142435 -0.0011481262 -0.52743132 0.0028297421 10.16180508 6 0.9185283 1.142342 -0.0001330055 -13.86515518 0.0017989539 14.53228342 8 0.9211519 1.147881 -0.0019486763 -2.60237232 0.0040569513 7.83383529 9 0.9215684 1.148400 0.0015408723 3.13779466 0.0042136709 8.72568982 12 0.9240988 1.152329 -0.0010523464 3.09377524 0.0026573965 7.26283240 13 0.9240005 1.152314 -0.0020544122 1.51357792 0.0062311024 8.54986753 14 0.9242046 1.152342 -0.0020353818 6.96665147 0.0046971726 7.81071100 16 0.9248007 1.153601 0.0010370560 3.92715925 0.0026905091 10.87243770 17 0.9248163 1.153721 -0.0012837037 3.19658491 0.0029140720 7.59088140 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.729 co2l1 = 4.452 co2l0 = 1.38" [1] "co2l0 = -157.12 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "80 out of 120 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "40 out of 1220 1-min values rejected as stack air" [1] "40 out of 1220 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"