[1] "2025-04-30 02:37:07 MDT" [1] "1703" "170329" "d088" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170329a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84240 63 [1] 84240 [1] 84240 [1] "testing skipping spike filter" [1] 84240 [1] 84240 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:37:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.079, ave o2scale2 = 0.873" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "210 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.079, ave o2scale2 = 0.873" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "210 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:37:11 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:37:11 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:37:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:37:30 MDT" [1] "reading in recalculated plot titles" [1] "Removed 210 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1192 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:37:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.471 co2off = 374.48 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.2 minutes" [1] "Average Cal: 6.47 minutes" [1] "Shortest Cal: 1.02 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [3,] 5 6 [4,] 7 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 2 223 226 0.1751576 0.1772909 0.1769355 1 5.651687 299.7697 0.9257936 6 2 428 436 0.3730616 0.3787514 0.3766173 3 5.569250 298.8281 0.9244627 7 4 437 443 0.3794630 0.3837435 0.3823203 3 8.290100 155.3981 0.9242977 8 3 444 449 0.3858777 0.3915828 0.3919385 3 4.776744 260.7585 0.9240380 10 4 616 624 0.5810007 0.5866924 0.5845579 2 8.262705 147.9076 0.9275865 11 2 625 633 0.5874038 0.5931056 0.5909682 2 5.522875 298.5541 0.9278663 13 2 905 913 0.7893731 0.7950774 0.7929425 3 5.448652 305.3251 0.9282471 14 4 914 922 0.7957894 0.8014871 0.7993481 3 8.171884 157.0764 0.9282398 16 3 932 940 0.8086023 0.8143009 0.8135895 3 4.619420 315.1922 0.9279862 jfcv2 co2slp o2slp co2sd o2sd 3 1.142857 -0.0018317255 -6.0512917 0.001325825 4.379999 6 1.141957 -0.0018698978 8.0640758 0.004598601 19.333738 7 1.141867 -0.0016646803 4.9743554 0.002950305 11.241341 8 1.141635 0.0013400225 22.3471648 0.004100965 16.188318 10 1.147019 -0.0010740382 6.9932120 0.003193767 16.994298 11 1.147544 -0.0007732765 -3.9123606 0.001783168 11.823381 13 1.149813 0.0006578057 1.3604833 0.001635327 15.414934 14 1.149860 -0.0018445748 -0.6841358 0.004389623 6.492075 16 1.149652 -0.0015157975 5.9172645 0.003856257 6.128070 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 372.128 co2l1 = 4.461 co2l0 = 0.381" [1] "co2l0 = -163.6 co2l1 = 0.248" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "82 out of 100 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "18 out of 1054 1-min values rejected as stack air" [1] "18 out of 1054 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"