[1] "2025-04-30 02:36:36 MDT" [1] "1703" "170328" "d087" Read 2 records [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170328a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84180 63 [1] 84180 [1] 84180 [1] "testing skipping spike filter" [1] 84180 [1] 84180 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:36:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.062, ave o2scale2 = 0.862" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "53 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.062, ave o2scale2 = 0.862" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "57 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:36:41 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:36:41 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:36:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:36:58 MDT" [1] "reading in recalculated plot titles" [1] "Removed 57 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 88 manually filtered row(s) from a screenall period" [1] "Removed 22 row(s) with variable TFCELL" [1] "TEMP: 1235 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:37:02 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.587 co2off = 370.71 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.21 minutes" [1] "Average Cal: 7.9 minutes" [1] "Shortest Cal: 6.15 minutes" [1] "Longest Cal: 8.22 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 171 179 0.1248386 0.1305385 0.1283972 3 5.642143 329.2373 0.9492309 3 4 180 188 0.1312499 0.1369418 0.1348076 3 8.348455 151.7607 0.9489318 4 3 189 197 0.1376533 0.1433515 0.1426403 3 4.860536 296.4280 0.9488587 6 4 461 469 0.3328826 0.3385785 0.3364423 2 8.355723 149.1625 0.9447177 7 2 470 478 0.3392928 0.3449994 0.3428628 2 5.645098 319.1437 0.9446124 9 4 941 949 0.7491948 0.7548975 0.7527613 2 8.450545 142.2482 0.9364144 10 2 950 958 0.7556094 0.7613104 0.7591708 2 5.729545 296.3511 0.9362227 12 2 1185 1191 0.9579736 0.9629680 0.9613994 3 5.720142 324.1324 0.9311727 13 4 1192 1198 0.9651035 0.9693753 0.9679513 3 8.436775 186.0268 0.9312341 14 3 1199 1206 0.9700904 0.9757901 0.9754342 3 4.928892 293.7163 0.9311443 jfcv2 co2slp o2slp co2sd o2sd 2 1.167343 8.468034e-04 9.9320475 0.002760801 23.649477 3 1.167092 1.786231e-04 8.3609571 0.001038149 21.007343 4 1.167030 -1.005681e-03 -25.3076325 0.002556359 25.976156 6 1.163423 9.363018e-05 -4.0740816 0.001087845 10.668742 7 1.163456 1.036069e-03 0.1682996 0.003247767 4.773873 9 1.155767 2.292319e-03 4.9833294 0.005728983 28.741758 10 1.155623 7.149983e-04 -1.8371210 0.001991752 14.711453 12 1.149834 -1.075386e-03 8.8603208 0.003327946 25.355208 13 1.149998 -4.084183e-04 -7.8894039 0.001097405 13.844123 14 1.149552 4.793240e-05 3.6392999 0.000692741 2.637708 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 371.347 co2l1 = 4.488 co2l0 = -0.487" [1] "co2l0 = -162.08 co2l1 = 0.233" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "144 out of 850 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "706 out of 1118 1-min values rejected as stack air" [1] "706 out of 1118 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"