[1] "2025-04-30 02:36:00 MDT" [1] "1703" "170327" "d086" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170327a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84060 63 [1] 84060 [1] 84060 [1] "testing skipping spike filter" [1] 84060 [1] 84060 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:36:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.048, ave o2scale2 = 0.852" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "37 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.048, ave o2scale2 = 0.852" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "40 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:36:05 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:36:05 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:36:26 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:36:27 MDT" [1] "reading in recalculated plot titles" [1] "Removed 40 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1360 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:36:31 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 4.526 co2off = 373.67 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 7.17 minutes" [1] "Shortest Cal: 2.05 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 5 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 110 118 0.08549578 0.09119039 0.08905317 2 8.205643 157.0355 3 2 119 127 0.09190168 0.09758927 0.09545650 2 5.511411 322.8411 10 4 674 682 0.50117520 0.50686513 0.50473099 2 8.294813 155.4566 11 2 683 691 0.50757656 0.51327225 0.51113742 2 5.592821 318.5816 13 2 962 970 0.70900324 0.71470200 0.71256796 3 5.596098 352.6964 14 4 971 979 0.71541322 0.72111201 0.71897180 3 8.288893 164.2755 15 3 980 988 0.72182361 0.72751244 0.72680144 3 4.804527 273.9213 17 4 1250 1258 0.91689627 0.92259705 0.92045995 1 8.313446 135.7601 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9410339 1.174842 3.004435e-04 -3.193740 0.001044401 17.742967 3 0.9412120 1.175090 6.105296e-05 1.723909 0.001458567 9.230625 10 0.9613425 1.174675 1.350311e-04 -1.751152 0.003352160 7.064135 11 0.9612224 1.174817 -1.418264e-03 8.253253 0.003960487 19.762180 13 0.9575275 1.173493 2.245365e-04 -5.911390 0.001852243 19.643185 14 0.9573013 1.173369 -1.018897e-03 -3.401219 0.002926111 22.576876 15 0.9574056 1.173469 2.722620e-03 -17.500867 0.006519787 17.947678 17 0.9533855 1.170603 4.084607e-03 8.053895 0.009263745 20.814738 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 371.684 co2l1 = 4.514 co2l0 = 0.227" [1] "co2l0 = -157.36 co2l1 = 0.21" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "93 out of 775 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "682 out of 1200 1-min values rejected as stack air" [1] "682 out of 1200 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"