[1] "2025-04-30 02:41:23 MDT"
[1] "1703"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1703/170326.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1703/170327.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1703/170328.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1703/170329.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1703/170330.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1703/170331.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1703/170401.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1703/170402.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1703/170403.html"  
[10] "/net/www/docs/homes/stephens/GO2/1703/170404.html"  
[11] "/net/www/docs/homes/stephens/GO2/1703/170405.html"  
[12] "/net/www/docs/homes/stephens/GO2/1703/170406.html"  
[13] "/net/www/docs/homes/stephens/GO2/1703/lmg_1703.html"
 [1] "/net/www/docs/homes/stephens/GO2/1703/170326.html"
 [2] "/net/www/docs/homes/stephens/GO2/1703/170327.html"
 [3] "/net/www/docs/homes/stephens/GO2/1703/170328.html"
 [4] "/net/www/docs/homes/stephens/GO2/1703/170329.html"
 [5] "/net/www/docs/homes/stephens/GO2/1703/170330.html"
 [6] "/net/www/docs/homes/stephens/GO2/1703/170331.html"
 [7] "/net/www/docs/homes/stephens/GO2/1703/170401.html"
 [8] "/net/www/docs/homes/stephens/GO2/1703/170402.html"
 [9] "/net/www/docs/homes/stephens/GO2/1703/170403.html"
[10] "/net/www/docs/homes/stephens/GO2/1703/170404.html"
[11] "/net/www/docs/homes/stephens/GO2/1703/170405.html"
[12] "/net/www/docs/homes/stephens/GO2/1703/170406.html"
[1] "170326" "170406"
 [1] "170326" "170327" "170328" "170329" "170330" "170331" "170401" "170402"
 [9] "170403" "170404" "170405" "170406"
[1] "000000" "999999"
[1] "170326_mr_proc.txt, 170326_cal_periods.txt, 170326_cal_param.txt, 1161 jogs"
[1] "170327_mr_proc.txt, 170327_cal_periods.txt, 170327_cal_param.txt, 1360 jogs"
[1] "170328_mr_proc.txt, 170328_cal_periods.txt, 170328_cal_param.txt, 1235 jogs"
[1] "170329_mr_proc.txt, 170329_cal_periods.txt, 170329_cal_param.txt, 1192 jogs"
[1] "170330_mr_proc.txt, 170330_cal_periods.txt, 170330_cal_param.txt, 1381 jogs"
[1] "170331_mr_proc.txt, 170331_cal_periods.txt, 170331_cal_param.txt, 1340 jogs"
[1] "170401_mr_proc.txt, 170401_cal_periods.txt, 170401_cal_param.txt, 1279 jogs"
[1] "170402_mr_proc.txt, 170402_cal_periods.txt, 170402_cal_param.txt, 1258 jogs"
[1] "170403_mr_proc.txt, 170403_cal_periods.txt, 170403_cal_param.txt, 1401 jogs"
[1] "170404_mr_proc.txt, 170404_cal_periods.txt, 170404_cal_param.txt, 1275 jogs"
[1] "170405_mr_proc.txt, 170405_cal_periods.txt, 170405_cal_param.txt, 976 jogs"
[1] "170406_mr_proc.txt, 170406_cal_periods.txt, 170406_cal_param.txt, 584 jogs"
[1] "170326" "170406" "d085"   "d096"  
[1] "Calculating derived concentration values"
[1] "2025-04-30 02:41:31 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 1.081, ave o2scale2 = 0.87"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2025-04-30 02:41:34 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2025-04-30 02:41:46 MDT"
[1] "2025-04-30 02:41:49 MDT"
[1] "Reading in cylinder log"
Read 78 records
[1] "Finding cylinder IDs"
Read 536 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 396.87 O2 = -495.4"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1"
[1] "position 3 cylinder CC339490 description: LS CO2 = 409.04 O2 = -699.1"
[1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1703 Valve transient for  Line 1 after Cal = -0.18 , -0.11 , -0.02 , -0.03 , -0.03 n = 51"
[1] "1703 Valve transient for  Line 2 after Line 1 = -0.78 , -1.03 , -1.72 , -2.15 , -1.83 n = 1"
[1] "1703 Valve transient for  Line 1 after HS = -0.14 , -0.09 , -0.01 , 0 , 0.01 n = 16"
[1] "1703 Valve transient for  Line 1 after MS = -0.31 , -0.18 , -0.05 , -0.06 , -0.06 n = 24"
[1] "1703 Valve transient for  Line 1 after LT = 2.05 , 1.25 , 0.41 , 0 , -0.01 n = 11"
[1] "1703 Valve transient for  HS after Line 1 = 0.2 , 0.11 , -0.01 , 0 , -0.01 n = 14"
[1] "1703 Valve transient for  HS after MS = -0.45 , -0.24 , -0.02 , -0.01 , 0 n = 1"
[1] "1703 Valve transient for  HS after LS = 1.88 , 0.94 , -0.01 , -0.01 , 0 n = 16"
[1] "1703 Valve transient for  MS after Line 1 = -0.01 , -0.01 , 0 , 0 , 0 n = 1"
[1] "1703 Valve transient for  MS after LS = 1.85 , 0.92 , 0.01 , 0 , -0.01 n = 9"
[1] "1703 Valve transient for  MS after LT = 2.04 , 1.04 , 0.01 , 0 , 0 n = 4"
[1] "1703 Valve transient for  LS after Line 1 = -1.94 , -0.99 , -0.01 , 0 , -0.01 n = 14"
[1] "1703 Valve transient for  LS after Line 2 = -0.11 , -0.05 , 0.01 , 0.02 , 0.03 n = 1"
[1] "1703 Valve transient for  LS after HS = -1.95 , -0.96 , 0.01 , 0.02 , 0.02 n = 12"
[1] "1703 Valve transient for  LT after HS = -0.24 , -0.13 , -0.01 , -0.01 , -0.01 n = 5"
[1] "1703 Valve transient for  LT after LS = 0.32 , 0.18 , 0.03 , 0.03 , 0.02 n = 3"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "399 out of 3925 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "3526 out of 12585 1-min values rejected as stack air"
[1] "3408 out of 12375 Line 1 1-min values rejected as stack air"
[1] "118 out of 210 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1703loxy.d085"
[1] "LMG1703loxy.d086"
[1] "LMG1703loxy.d087"
[1] "LMG1703loxy.d088"
[1] "LMG1703loxy.d093"
[1] "LMG1703loxy.d095"
[1] "LMG1703loxy.d096"
[1] "LMG1703loxy.d097"
[1] "LMG1703loxy.d098"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]  [,2]
 [1,]  92.5 0.250
 [2,] 102.5 0.125
 [3,] 107.5 0.125
 [4,] 112.5 0.500
 [5,] 117.5 0.250
 [6,] 122.5 0.250
 [7,] 127.5 0.375
 [8,] 132.5 0.250
 [9,] 137.5 1.000
[10,] 142.5 0.250
[11,] 147.5 0.625
[12,] 152.5 1.625
[13,] 157.5 0.375
[14,] 162.5 0.125
[15,] 167.5 0.125
[16,] 172.5 0.250
[17,] 177.5 0.375
[18,] 182.5 0.125
[19,] 187.5 0.125
[20,] 192.5 0.125
[21,] 197.5 0.375
[22,] 202.5 0.125
[23,] 207.5 0.250
[24,] 212.5 0.375
[25,] 217.5 0.250
[26,] 222.5 0.250
[27,] 227.5 0.125
[28,] 237.5 0.125
[29,] 242.5 0.375
[30,] 247.5 0.250
[31,] 252.5 0.250
[32,] 257.5 0.375
[33,] 262.5 0.250
[34,] 267.5 0.250
[35,] 272.5 0.250
[36,] 277.5 0.375
[37,] 282.5 0.250
[38,] 287.5 0.250
[39,] 292.5 0.125
[40,] 397.5 0.125
[41,] 407.5 0.125
[42,] 412.5 5.625
[43,] 442.5 0.250
[44,] 447.5 0.375
      [,1]   [,2]
[1,] 157.5  1.375
[2,] 162.5  1.750
[3,] 167.5  1.625
[4,] 172.5  1.750
[5,] 347.5  0.125
[6,] 412.5  6.375
[7,] 417.5 13.750
[8,] 422.5  5.750
       [,1]  [,2]
 [1,]  92.5 1.125
 [2,]  97.5 0.500
 [3,] 102.5 1.125
 [4,] 107.5 1.125
 [5,] 112.5 0.375
 [6,] 117.5 0.875
 [7,] 122.5 0.500
 [8,] 127.5 1.125
 [9,] 132.5 1.000
[10,] 137.5 1.125
[11,] 142.5 1.000
[12,] 147.5 0.500
[13,] 152.5 1.125
[14,] 157.5 1.125
[15,] 162.5 1.000
[16,] 167.5 1.125
[17,] 172.5 1.250
[18,] 177.5 2.375
[19,] 182.5 2.750
[20,] 187.5 1.375
[21,] 192.5 1.000
[22,] 197.5 0.625
[23,] 202.5 1.125
[24,] 207.5 1.000
[25,] 212.5 0.625
[26,] 217.5 1.125
[27,] 222.5 1.125
[28,] 227.5 1.125
[29,] 232.5 0.875
[30,] 237.5 1.125
[31,] 422.5 5.750
[32,] 427.5 1.125
[33,] 432.5 1.125
[34,] 437.5 0.875
[35,] 442.5 0.875
[36,] 447.5 1.125
      [,1]  [,2]
[1,] 242.5 1.125
[2,] 247.5 0.625
[3,] 252.5 1.125
[4,] 257.5 1.125
[5,] 262.5 1.000
[6,] 267.5 0.750
[1] "making cruise html"
[1] "2025-04-30 02:42:07 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"