[1] "2025-04-30 02:33:12 MDT" [1] "1702" "170320" "d079" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170320a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 52468 63 [1] 52468 [1] 52468 [1] "testing skipping spike filter" [1] 52468 [1] 52468 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:33:14 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.068, ave o2scale2 = 0.864" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "46 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.068, ave o2scale2 = 0.864" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "46 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:33:15 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:33:15 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:33:23 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:33:24 MDT" [1] "reading in recalculated plot titles" [1] "Removed 47 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 827 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:33:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.98 co2off = 372.33 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 7.61 minutes" [1] "Shortest Cal: 5.11 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 230 237 0.1825754 0.1875525 0.1857745 3 20.09732 318.3799 0.9384667 3 4 238 245 0.1882627 0.1939434 0.1916945 3 42.06507 203.3074 0.9382889 4 3 246 254 0.1946533 0.2003378 0.1996279 3 28.98846 308.5680 0.9380987 6 4 518 526 0.3899786 0.3956601 0.3935292 2 42.10930 205.9778 0.9337867 7 2 527 535 0.3963703 0.4020495 0.3999198 2 20.15942 316.4927 0.9337654 10 2 800 807 0.5988116 0.6037822 0.6020067 3 20.20909 322.5582 0.9383576 11 4 808 813 0.6066227 0.6101736 0.6091083 3 42.19917 204.5077 0.9377732 12 3 814 822 0.6108839 0.6165685 0.6158551 3 29.08214 308.9262 0.9377823 jfcv2 co2slp o2slp co2sd o2sd 2 1.159891 0.003560028 -0.40609292 0.008206459 1.240852 3 1.159688 0.001955660 -1.29626145 0.005709575 3.634481 4 1.159381 0.002702841 2.69581098 0.006235071 2.923505 6 1.154953 -0.005614141 -0.01872201 0.014541671 3.626229 7 1.154846 0.001227097 1.10091347 0.005154604 2.680779 10 1.160303 0.001548777 -0.25368542 0.003953786 3.635382 11 1.159572 0.002450651 1.15679496 0.004192744 2.113959 12 1.159472 0.007529410 -0.93171479 0.019555234 1.825024 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 364.929 co2l1 = 0.979 co2l0 = 0.434" [1] "co2l0 = -161.3 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "59 out of 195 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "136 out of 715 1-min values rejected as stack air" [1] "136 out of 715 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"