[1] "2025-04-30 02:32:45 MDT" [1] "1702" "170319" "d078" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170319a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84480 63 [1] 84480 [1] 84480 [1] "testing skipping spike filter" [1] 84480 [1] 84480 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:32:49 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.06, ave o2scale2 = 0.857" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "50 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.06, ave o2scale2 = 0.857" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "50 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:32:50 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:32:50 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:33:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:33:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 50 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1356 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:33:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.981 co2off = 357.04 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 7.96 minutes" [1] "Shortest Cal: 7.16 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 197 204 0.1419586 0.1469363 0.1451571 2 41.92913 207.0898 0.9394138 3 2 205 211 0.1476464 0.1533260 0.1513383 2 20.00231 334.2475 0.9396623 4 5 212 219 0.1540359 0.1590051 0.1586501 NA 40.17206 211.8551 0.9398099 6 2 475 480 0.3501424 0.3551127 0.3533377 3 19.92459 316.2230 0.9443248 7 4 481 489 0.3558233 0.3615027 0.3593729 3 41.93782 201.8332 0.9443011 8 3 490 498 0.3622127 0.3678974 0.3671873 3 28.80438 310.8449 0.9443926 10 4 746 753 0.5575216 0.5632016 0.5613083 2 42.06363 196.9189 0.9477567 11 2 754 761 0.5639116 0.5695922 0.5676991 2 20.15174 326.8021 0.9476670 13 2 1031 1039 0.7656002 0.7712802 0.7691501 3 20.04017 318.0156 0.9457040 14 4 1040 1048 0.7719901 0.7776686 0.7755392 3 42.03181 200.6323 0.9456111 16 3 1058 1066 0.7847701 0.7904531 0.7897432 3 28.96023 306.0929 0.9456547 18 4 1321 1329 0.9736881 0.9793719 0.9772413 2 41.98790 206.9087 0.9444424 19 2 1330 1337 0.9800820 0.9857626 0.9839860 2 20.05273 312.9308 0.9446200 jfcv2 co2slp o2slp co2sd o2sd 2 1.162445 0.002547571 1.85860675 0.005363214 3.802945 3 1.162620 0.007519003 3.98861706 0.020271353 11.062116 4 1.162804 -0.065111066 4.69662561 0.094133590 3.395462 6 1.167423 0.006314456 -0.56428263 0.015418848 1.603840 7 1.167412 0.002742442 1.06606757 0.007698876 3.214253 8 1.167320 0.004281135 4.32349878 0.012441762 4.423913 10 1.171022 -0.001391161 -4.30975793 0.005356373 14.213692 11 1.170699 0.002437655 -0.02985804 0.009007517 5.762343 13 1.168181 -0.006876968 -0.93633525 0.016939180 3.188346 14 1.168156 0.004360599 -0.83617303 0.012279461 7.056478 16 1.168277 -0.009057561 -1.53273713 0.021291709 1.584136 18 1.166717 0.004872687 1.22778984 0.011072492 4.365282 19 1.166888 0.003031774 2.86429926 0.009316743 5.662649 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.04 co2l1 = 0.979 co2l0 = 0.468" [1] "co2l0 = -159.21 co2l1 = 0.212" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "63 out of 75 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "12 out of 1188 1-min values rejected as stack air" [1] "12 out of 1188 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"