[1] "2025-04-30 02:32:28 MDT" [1] "1702" "170318" "d077" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170318a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 42130 63 [1] 42130 [1] 42130 [1] "testing skipping spike filter" [1] 42130 [1] 42130 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:32:30 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.084, ave o2scale2 = 0.873" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "18 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.084, ave o2scale2 = 0.873" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "18 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:32:30 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:32:30 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:32:37 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:32:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 19 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 683 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:32:41 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.979 co2off = 369.25 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.17 minutes" [1] "Average Cal: 7.84 minutes" [1] "Shortest Cal: 7.16 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 186 194 0.1330184 0.1387029 0.1365703 3 20.03474 321.1954 0.9246922 3 4 195 203 0.1394126 0.1450911 0.1429614 3 42.02324 200.8318 0.9246051 4 3 204 212 0.1458011 0.1514781 0.1507685 3 28.86494 296.5847 0.9244970 6 4 475 482 0.3418204 0.3467917 0.3450147 2 42.03194 218.9272 0.9200545 7 2 483 491 0.3475025 0.3531792 0.3510504 2 20.04710 301.6262 0.9199778 jfcv2 co2slp o2slp co2sd o2sd 2 1.147582 0.0019085891 1.268481 0.012103150 4.384168 3 1.147406 -0.0092912247 -1.391135 0.022085842 5.288821 4 1.147426 -0.0002839332 -3.140356 0.003880037 3.574296 6 1.143213 0.0040354509 -4.878605 0.008674045 14.017122 7 1.143184 -0.0024313777 -2.584924 0.006457378 9.346591 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.075 co2l1 = 0.978 co2l0 = 0.017" [1] "co2l0 = -171.19 co2l1 = 0.261" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 599 1-min values rejected as stack air" [1] "0 out of 599 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"