[1] "2025-04-30 02:31:59 MDT" [1] "1702" "170317" "d076" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170317a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84420 63 [1] 84420 [1] 84420 [1] "testing skipping spike filter" [1] 84420 [1] 84420 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:32:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.077, ave o2scale2 = 0.87" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "35 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.077, ave o2scale2 = 0.87" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "37 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:32:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:32:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:32:17 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:32:19 MDT" [1] "reading in recalculated plot titles" [1] "Removed 37 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1369 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:32:23 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.981 co2off = 365.22 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 8.04 minutes" [1] "Shortest Cal: 7.16 minutes" [1] "Longest Cal: 8.23 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 125 132 0.09254089 0.09752378 0.09573946 2 41.67322 201.6889 3 2 133 141 0.09823788 0.10391727 0.10178785 2 19.72185 317.6721 6 2 406 414 0.30006264 0.30574184 0.30361186 3 19.83329 320.3895 7 4 415 423 0.30645359 0.31213704 0.31000679 3 41.80237 202.9759 8 3 424 432 0.31284711 0.31852833 0.31781844 3 28.69504 313.0618 10 4 687 695 0.50825012 0.51393134 0.51180067 2 41.74075 201.6430 11 2 696 703 0.51464170 0.51961293 0.51783732 2 19.76292 313.7594 13 2 972 980 0.71657535 0.72225524 0.72012499 3 19.95565 321.2237 14 4 981 989 0.72296539 0.72864609 0.72651576 3 41.97979 203.8092 16 3 999 1007 0.73596134 0.74165055 0.74094067 3 28.79690 309.1485 18 4 1264 1272 0.92496626 0.93064635 0.92851605 2 41.98029 185.3715 19 2 1273 1281 0.93135625 0.93703753 0.93490569 2 19.96562 319.4274 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9375538 1.158713 0.0001316009 1.7088104 0.004020018 4.095438 3 0.9373599 1.158547 0.0007421945 0.1286943 0.007671720 2.912222 6 0.9303615 1.151093 0.0003229619 -2.0918896 0.007654206 5.734199 7 0.9299663 1.150585 -0.0041063000 -3.3011047 0.010072939 8.365272 8 0.9296547 1.150451 0.0008467257 -1.0327655 0.003414479 1.497603 10 0.9249328 1.146544 -0.0027133408 -0.6894723 0.009553918 3.233321 11 0.9246829 1.146359 -0.0095413247 -3.2821430 0.019402668 6.686973 13 0.9235107 1.146292 0.0013932000 -0.2151748 0.013039995 9.982369 14 0.9234962 1.146239 0.0008244953 -2.0279556 0.010866367 6.623535 16 0.9236170 1.146366 0.0031152782 10.5032676 0.008446281 11.030549 18 0.9255556 1.148531 -0.0041147128 -2.8441697 0.012380981 6.705370 19 0.9256509 1.148708 0.0050668365 -0.6001165 0.013814594 5.913405 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.262 co2l1 = 0.978 co2l0 = 0.148" [1] "co2l0 = -158.33 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "18 out of 230 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "212 out of 1193 1-min values rejected as stack air" [1] "212 out of 1193 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"