[1] "2025-04-30 02:31:31 MDT" [1] "1702" "170316" "d075" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170316a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84480 63 [1] 84480 [1] 84480 [1] "testing skipping spike filter" [1] 84480 [1] 84480 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:31:35 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.057, ave o2scale2 = 0.855" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "8 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.057, ave o2scale2 = 0.855" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:31:35 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:31:35 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:31:49 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:31:50 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1398 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:31:54 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.981 co2off = 365.72 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 8.11 minutes" [1] "Shortest Cal: 7.16 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 70 78 0.05099103 0.05667746 0.05454161 3 19.27641 318.4810 3 4 79 87 0.05738779 0.06306785 0.06093731 3 41.29127 202.0893 4 3 88 96 0.06377810 0.06946464 0.06875481 3 28.14579 302.3830 6 4 363 371 0.25919236 0.26487231 0.26274205 2 41.34304 204.6876 7 2 372 380 0.26558261 0.27126484 0.26913515 2 19.41349 318.1920 9 2 655 663 0.46733527 0.47301649 0.47088573 3 19.44767 318.9448 10 4 664 672 0.47372685 0.47941288 0.47728089 3 41.39812 201.0813 12 3 682 690 0.48651438 0.49219682 0.49148670 3 28.26980 303.2407 14 4 945 952 0.67619416 0.68116672 0.67939106 2 41.43036 208.7214 15 2 953 960 0.68187703 0.68756360 0.68542921 2 19.47202 305.1062 17 2 1235 1243 0.88365518 0.88934036 0.88720848 3 19.59886 321.9632 18 4 1244 1252 0.89005067 0.89573192 0.89360134 3 41.60694 199.3238 19 3 1253 1261 0.89644198 0.90212703 0.90141707 3 28.47659 302.8820 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9469882 1.171561 -2.442683e-03 0.67873404 0.005651541 2.983761 3 0.9470036 1.171475 3.588576e-03 -0.38452376 0.009737419 2.118440 4 0.9469705 1.171553 2.047127e-03 3.67297301 0.013479385 4.051122 6 0.9474355 1.171157 -3.617431e-03 -0.82088547 0.008304418 3.543020 7 0.9474922 1.171311 3.666183e-03 -0.06025856 0.010416985 3.278340 9 0.9474943 1.170780 2.496520e-03 0.51279643 0.010930338 1.693265 10 0.9473363 1.170508 3.872805e-04 -1.46790394 0.007040658 3.939999 12 0.9476358 1.170750 7.421689e-05 -2.07208307 0.003474503 2.145006 14 0.9460266 1.168747 1.538033e-03 1.61107372 0.005660363 4.331602 15 0.9459511 1.168733 -6.652734e-03 3.95506896 0.017186814 10.820266 17 0.9433124 1.165435 3.522902e-03 -0.19291832 0.014929815 3.982140 18 0.9431981 1.165154 -2.484182e-03 0.39670239 0.012917406 4.123452 19 0.9429829 1.165024 -3.840409e-03 6.65574846 0.008940913 7.118758 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.641 co2l1 = 0.979 co2l0 = 0.161" [1] "co2l0 = -162.16 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "62 out of 117 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "55 out of 1232 1-min values rejected as stack air" [1] "55 out of 1232 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"