[1] "2025-04-30 02:31:02 MDT" [1] "1702" "170315" "d074" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170315a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84420 63 [1] 84420 [1] 84420 [1] "testing skipping spike filter" [1] 84420 [1] 84420 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:31:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.062, ave o2scale2 = 0.857" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "5 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.062, ave o2scale2 = 0.857" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "5 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:31:07 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:31:07 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:31:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:31:21 MDT" [1] "reading in recalculated plot titles" [1] "Removed 5 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1401 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:31:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.981 co2off = 369.39 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 8.11 minutes" [1] "Shortest Cal: 7.16 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 14 21 0.01071056 0.01568166 0.01390598 2 41.29028 203.2993 3 2 22 30 0.01639248 0.02207494 0.01994377 2 19.32327 313.3484 5 2 306 314 0.21816409 0.22384352 0.22171372 3 19.32556 318.2902 6 4 315 323 0.22455376 0.23023741 0.22810744 3 41.27656 206.9089 8 3 333 341 0.23734196 0.24301979 0.24231009 3 28.15269 300.7759 10 4 599 607 0.42634436 0.43202572 0.42989492 2 41.37165 200.3381 11 2 608 616 0.43273605 0.43841959 0.43628768 2 19.43875 320.9201 13 2 891 899 0.63454097 0.64023009 0.63809801 3 19.31915 314.3419 14 4 900 908 0.64094054 0.64662546 0.64449254 3 41.26919 199.8894 15 3 909 917 0.64733764 0.65301959 0.65230948 3 28.14632 307.1948 17 4 1181 1189 0.84275524 0.84843950 0.84630769 2 41.07088 206.1433 18 2 1190 1198 0.84914986 0.85483148 0.85270086 2 19.14964 314.0159 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9381810 1.163974 -0.0006756264 3.80472798 0.004773094 12.969930 3 0.9382398 1.164078 -0.0116572145 -1.94772840 0.026513354 6.252982 5 0.9394734 1.164954 -0.0002118415 -1.86351915 0.005795450 4.690727 6 0.9395473 1.164947 -0.0021317908 1.01625743 0.005780490 4.337260 8 0.9397829 1.165076 -0.0051827487 2.10845118 0.013165958 2.229293 10 0.9412734 1.166327 -0.0018355264 -0.15819842 0.004296446 1.420385 11 0.9413406 1.166476 -0.0008837002 -1.33253308 0.002714016 4.416005 13 0.9436271 1.168643 -0.0030947731 -0.39031764 0.008258192 3.283536 14 0.9435861 1.168496 0.0004941876 1.77827181 0.007855051 4.652123 15 0.9436723 1.168713 0.0010299859 1.62247278 0.005805487 2.167390 17 0.9455339 1.170593 -0.0025138787 0.08955409 0.014431160 2.061497 18 0.9456534 1.170815 -0.0017960704 0.29672962 0.015015171 1.108553 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.749 co2l1 = 0.98 co2l0 = 0.107" [1] "co2l0 = -161.74 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "83 out of 115 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "32 out of 1224 1-min values rejected as stack air" [1] "32 out of 1224 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"