[1] "2025-04-30 02:30:36 MDT" [1] "1702" "170314" "d073" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170314a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84420 63 [1] 84420 [1] 84420 [1] "testing skipping spike filter" [1] 84420 [1] 84420 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:30:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.071, ave o2scale2 = 0.862" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "9 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.071, ave o2scale2 = 0.862" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "11 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:30:41 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:30:41 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:30:51 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:30:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 11 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1395 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:30:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.981 co2off = 362.2 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 8.09 minutes" [1] "Shortest Cal: 7.16 minutes" [1] "Longest Cal: 8.18 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 247 255 0.1770779 0.1827556 0.1806261 2 41.70239 197.7892 0.9310203 3 2 256 263 0.1834655 0.1884382 0.1866616 2 19.72808 334.5863 0.9310641 5 2 536 544 0.3850981 0.3907813 0.3886515 3 19.84604 318.1786 0.9329426 6 4 545 553 0.3914912 0.3971732 0.3950409 3 41.80904 204.8116 0.9329978 7 3 554 562 0.3978833 0.4035607 0.4028510 3 28.73138 298.3982 0.9330835 9 4 828 836 0.5933044 0.5989867 0.5968556 2 41.91705 205.9857 0.9351169 10 2 837 845 0.5996966 0.6053749 0.6032456 2 19.90338 316.8349 0.9352418 13 2 1118 1126 0.8015672 0.8072454 0.8051157 3 19.22137 312.3014 0.9363132 14 4 1127 1135 0.8079555 0.8136338 0.8115041 3 41.11277 199.1089 0.9362898 15 3 1136 1144 0.8143436 0.8200246 0.8193149 3 27.96670 328.1454 0.9363975 jfcv2 co2slp o2slp co2sd o2sd 2 1.158728 1.901232e-03 6.13784597 0.013165845 17.727636 3 1.158777 -5.687046e-03 3.67521798 0.017605693 16.348288 5 1.160102 -8.075617e-05 -0.09133227 0.002765984 3.100875 6 1.160064 4.432702e-03 -1.64342724 0.010168621 5.388402 7 1.160257 -1.030971e-03 5.24165840 0.005678728 5.378817 9 1.161601 1.878275e-03 0.54780249 0.005603481 1.579102 10 1.161796 -1.105749e-02 2.54987925 0.024989749 9.878373 13 1.162665 -3.982886e-03 2.27883910 0.009519746 12.381981 14 1.162598 -2.068323e-03 1.29411293 0.013205394 11.098462 15 1.162767 8.318462e-04 5.48496423 0.002456504 9.678729 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.404 co2l1 = 0.979 co2l0 = 0.232" [1] "co2l0 = -158.28 co2l1 = 0.209" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "126 out of 320 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "194 out of 1250 1-min values rejected as stack air" [1] "194 out of 1250 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"