[1] "2025-04-30 02:30:08 MDT" [1] "1702" "170313" "d072" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170313a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84420 63 [1] 84420 [1] 84420 [1] "testing skipping spike filter" [1] 84420 [1] 84420 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:30:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.081, ave o2scale2 = 0.865" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "68 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.081, ave o2scale2 = 0.865" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "70 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:30:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:30:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:30:26 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:30:28 MDT" [1] "reading in recalculated plot titles" [1] "Removed 70 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1336 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:30:31 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.98 co2off = 365.45 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 7.58 minutes" [1] "Shortest Cal: 5.11 minutes" [1] "Longest Cal: 8.32 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 170 177 0.1359254 0.1416058 0.1398307 3 19.89433 313.9380 0.9213445 3 4 178 183 0.1423156 0.1458652 0.1448003 3 41.94009 207.4257 0.9215344 4 3 184 192 0.1487088 0.1544851 0.1537555 3 28.78163 310.0614 0.9218105 6 4 458 466 0.3440977 0.3497808 0.3476498 2 41.81279 205.7664 0.9240986 7 2 467 475 0.3504918 0.3561710 0.3540415 2 19.80926 314.1797 0.9241368 10 2 723 731 0.5522609 0.5579465 0.5558136 3 19.64346 329.9970 0.9264021 11 4 732 740 0.5586571 0.5643405 0.5622088 3 41.59759 201.2074 0.9263217 12 3 741 749 0.5650508 0.5707326 0.5700224 3 28.42121 297.4799 0.9262782 14 4 1010 1016 0.7621286 0.7663954 0.7649709 2 41.74860 197.7438 0.9254026 15 2 1017 1022 0.7685262 0.7727878 0.7717225 2 19.73349 320.8050 0.9258879 17 2 1295 1302 0.9696308 0.9746035 0.9728273 3 19.67558 320.9529 0.9290140 18 4 1303 1311 0.9753142 0.9810033 0.9788726 3 41.65046 211.6414 0.9290021 20 3 1321 1328 0.9881073 0.9930784 0.9927232 3 28.56064 288.7391 0.9292872 jfcv2 co2slp o2slp co2sd o2sd 2 1.153566 -0.0050737359 0.72876787 0.013700048 2.3614493 3 1.153751 0.0031789424 -2.43407773 0.009046250 3.2677088 4 1.154139 -0.0033533651 -4.29085753 0.009716853 4.5830154 6 1.156165 0.0004611486 -0.39253935 0.009266716 3.5391701 7 1.156201 -0.0020745298 -1.57118969 0.011158099 3.9741032 10 1.156962 -0.0034446627 -0.86663748 0.007968677 16.0201572 11 1.156777 -0.0009251237 0.83047252 0.007520446 3.2630114 12 1.156885 -0.0084945794 -0.53277387 0.020471325 1.0743295 14 1.154773 0.0098333083 -1.33223447 0.016102006 3.1589905 15 1.155370 -0.0097933605 -0.05398192 0.013204037 0.8238205 17 1.157781 0.0050549082 1.64090887 0.010877921 4.7152177 18 1.157692 0.0032301133 -0.08613403 0.010301311 5.6640463 20 1.157956 -0.0026420463 2.16159917 0.005364148 1.5632544 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.362 co2l1 = 0.977 co2l0 = 0.123" [1] "co2l0 = -161.63 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "77 out of 160 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "83 out of 1157 1-min values rejected as stack air" [1] "83 out of 1157 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"