[1] "2025-04-30 02:29:41 MDT" [1] "1702" "170312" "d071" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170312a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84360 63 [1] 84360 [1] 84360 [1] "testing skipping spike filter" [1] 84360 [1] 84360 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:29:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.077, ave o2scale2 = 0.863" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "18 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.077, ave o2scale2 = 0.863" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "18 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:29:45 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:29:45 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:29:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:30:00 MDT" [1] "reading in recalculated plot titles" [1] "Removed 18 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1386 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:30:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.98 co2off = 361.31 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 7.9 minutes" [1] "Shortest Cal: 5.12 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 131 138 0.09413614 0.09982587 0.09769413 2 41.70672 204.4472 3 2 139 147 0.10053602 0.10621612 0.10408561 2 19.70864 318.8335 6 2 422 430 0.30252257 0.30821496 0.30608007 3 19.86221 315.0379 7 4 431 439 0.30892581 0.31461299 0.31248023 3 41.77338 198.5885 8 3 440 448 0.31532399 0.32101389 0.32030321 3 28.64143 303.5639 10 4 712 720 0.51089303 0.51658652 0.51444883 2 41.87064 201.4154 11 2 721 729 0.51729774 0.52298452 0.52085198 2 19.89982 297.9473 13 2 1001 1006 0.71931212 0.72286707 0.72180043 3 20.13077 320.2206 14 4 1007 1014 0.72642242 0.73139890 0.72962170 3 42.06375 199.6850 16 3 1024 1032 0.73852002 0.74420674 0.74349594 3 28.94452 296.6551 18 4 1286 1294 0.92771777 0.93340637 0.93127297 2 41.97858 204.0794 19 2 1295 1303 0.93411739 0.93980477 0.93767214 2 19.93534 319.0083 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9349665 1.163788 0.0022975306 -1.1025664 0.008563310 5.015503 3 0.9347780 1.163636 -0.0071016636 -1.3429992 0.016516947 4.719587 6 0.9322238 1.160871 0.0001420738 -0.5100316 0.003852397 5.663407 7 0.9320510 1.160600 -0.0055209310 -0.4379651 0.018924274 1.852718 8 0.9319538 1.160714 -0.0023055124 -3.1887065 0.005272327 3.640145 10 0.9284322 1.158584 -0.0013239693 0.6213555 0.003833398 5.254514 11 0.9284217 1.158757 -0.0037201301 -8.3323357 0.012759006 21.126793 13 0.9261265 1.157319 0.0013240195 -2.8522118 0.005343994 3.927859 14 0.9260183 1.157226 -0.0016083025 -1.7201996 0.004734019 5.397154 16 0.9258063 1.156921 -0.0049587748 1.1897122 0.011641773 1.406162 18 0.9238032 1.155692 -0.0037995209 -0.6584490 0.010351864 3.453318 19 0.9236596 1.155627 -0.0088482749 -1.7227733 0.020793405 4.508555 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.196 co2l1 = 0.978 co2l0 = -0.048" [1] "co2l0 = -161.85 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "142 out of 395 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "253 out of 1213 1-min values rejected as stack air" [1] "253 out of 1213 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"