[1] "2025-04-30 02:28:50 MDT" [1] "1702" "170310" "d069" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170310a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84420 63 [1] 84420 [1] 84420 [1] "testing skipping spike filter" [1] 84420 [1] 84420 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:28:54 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.058, ave o2scale2 = 0.852" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.058, ave o2scale2 = 0.852" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "5 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:28:55 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:28:55 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:29:08 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:29:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 5 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1401 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:29:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.981 co2off = 365.69 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 8.18 minutes" [1] "Shortest Cal: 8.18 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 55 63 0.04091331 0.04659361 0.04446341 2 41.49747 205.2910 3 2 64 72 0.04731039 0.05298851 0.05085909 2 19.54234 316.6509 6 2 348 356 0.24918970 0.25486997 0.25273944 3 19.43100 315.9325 7 4 357 365 0.25558012 0.26126276 0.25913214 3 41.34054 200.6373 8 3 366 374 0.26197303 0.26765477 0.26694315 3 28.26580 301.3683 10 4 641 649 0.45733762 0.46301817 0.46088781 2 41.38650 203.4993 11 2 650 658 0.46372841 0.46941007 0.46727924 2 19.41498 317.3258 13 2 931 939 0.66548576 0.67117260 0.66904216 3 19.36408 318.4465 14 4 940 948 0.67188287 0.67757124 0.67543396 3 41.36419 204.0151 16 3 958 966 0.68467240 0.69035738 0.68964751 3 28.27242 309.6590 18 4 1224 1232 0.87365006 0.87933958 0.87720450 2 41.44682 199.5514 19 2 1233 1241 0.88004971 0.88572885 0.88359904 2 19.50911 313.9162 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9463274 1.174651 -0.0075266979 0.206031002 0.016864073 3.406875 3 0.9463155 1.174544 -0.0004847846 0.662219773 0.008282673 2.091421 6 0.9457259 1.173943 -0.0053064666 0.000434225 0.012186966 1.303195 7 0.9457585 1.174071 0.0053734510 -0.221250365 0.013887000 1.627642 8 0.9461065 1.174337 0.0073167391 1.426367796 0.018213628 1.475102 10 0.9463842 1.174966 0.0031105816 -1.048599394 0.011669884 2.585998 11 0.9464660 1.174975 -0.0108443939 0.172872178 0.025127014 1.366599 13 0.9458632 1.174476 -0.0015150229 -0.190354076 0.008330706 2.699521 14 0.9457693 1.174436 0.0057060603 -0.027651878 0.014241683 3.590884 16 0.9455123 1.174239 0.0050309919 4.723264685 0.012724480 4.831691 18 0.9439360 1.172705 0.0075381396 -0.732951111 0.017617220 3.419106 19 0.9440160 1.172720 -0.0064150290 0.942519055 0.015541892 2.639055 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.611 co2l1 = 0.979 co2l0 = 0.401" [1] "co2l0 = -161.07 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "60 out of 110 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "50 out of 1223 1-min values rejected as stack air" [1] "50 out of 1223 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"