[1] "2025-04-30 02:27:57 MDT" [1] "1702" "170308" "d067" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170308a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84300 63 [1] 84300 [1] 84300 [1] "testing skipping spike filter" [1] 84300 [1] 84300 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:28:01 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.059, ave o2scale2 = 0.853" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.059, ave o2scale2 = 0.853" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:28:01 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:28:01 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:28:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:28:16 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1401 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:28:19 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.981 co2off = 361.74 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 8.03 minutes" [1] "Shortest Cal: 7.18 minutes" [1] "Longest Cal: 8.21 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 232 240 0.1661198 0.1718111 0.1696774 3 19.71545 321.0080 0.9447832 3 4 241 249 0.1725224 0.1782150 0.1760786 3 41.62963 201.4408 0.9446829 5 3 259 266 0.1853280 0.1903126 0.1899571 3 28.48865 307.4139 0.9447362 7 4 524 532 0.3746103 0.3803063 0.3781706 2 41.63203 208.2627 0.9440310 8 2 533 541 0.3810177 0.3867054 0.3845724 2 19.64597 320.6357 0.9442701 10 2 817 824 0.5838049 0.5887934 0.5870103 3 19.55455 319.8966 0.9449057 11 4 825 833 0.5895047 0.5951938 0.5930602 3 41.50897 203.7997 0.9447125 12 3 834 842 0.5959050 0.6015981 0.6008872 3 28.37587 303.6272 0.9449141 14 4 1109 1117 0.7915749 0.7972723 0.7951315 2 41.69439 203.7427 0.9450033 15 2 1118 1126 0.7979836 0.8036722 0.8015388 2 19.72808 321.9756 0.9451518 jfcv2 co2slp o2slp co2sd o2sd 2 1.172104 0.0028270115 -0.7340685 0.007554613 5.183892 3 1.172108 -0.0054736046 0.3512201 0.013856266 4.700014 5 1.172172 -0.0174580064 -3.0767693 0.033637281 2.227275 7 1.171571 -0.0039065969 0.6575071 0.013085101 5.269037 8 1.171756 -0.0061961131 -0.7455821 0.014393234 3.128844 10 1.172142 0.0061108690 -2.1297252 0.012319219 4.438710 11 1.171963 0.0004119908 -0.4053068 0.005416730 2.013324 12 1.172077 -0.0023095135 -1.6089208 0.012457763 1.674217 14 1.172351 0.0056534712 1.3343002 0.013007896 3.663642 15 1.172454 -0.0011967698 0.8717140 0.006123800 2.619863 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.421 co2l1 = 0.979 co2l0 = -0.037" [1] "co2l0 = -160.66 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "155 out of 380 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "225 out of 1248 1-min values rejected as stack air" [1] "225 out of 1248 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"