[1] "2025-04-30 02:27:32 MDT" [1] "1702" "170307" "d066" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170307a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84420 63 [1] 84420 [1] 84420 [1] "testing skipping spike filter" [1] 84420 [1] 84420 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:27:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.057, ave o2scale2 = 0.852" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "2 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.057, ave o2scale2 = 0.852" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "4 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:27:36 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:27:36 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:27:48 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:27:49 MDT" [1] "reading in recalculated plot titles" [1] "Removed 4 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1402 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:27:52 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.981 co2off = 369.38 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 8.11 minutes" [1] "Shortest Cal: 7.16 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 172 179 0.1254951 0.1304670 0.1286920 2 41.42965 207.7341 0.9474548 3 2 180 188 0.1311775 0.1368567 0.1347268 2 19.46991 324.3290 0.9474969 5 2 464 472 0.3330665 0.3387557 0.3366203 3 19.40454 316.8930 0.9471364 6 4 473 481 0.3394658 0.3451476 0.3430168 3 41.34629 195.0131 0.9470807 7 3 482 490 0.3458579 0.3515425 0.3508325 3 28.20317 301.9250 0.9472093 9 4 757 765 0.5412648 0.5469513 0.5448161 2 41.43525 201.1784 0.9467442 10 2 766 774 0.5476660 0.5533460 0.5512159 2 19.49411 321.3020 0.9467446 13 2 1050 1058 0.7494771 0.7551589 0.7530280 3 19.75568 316.6671 0.9466001 14 4 1059 1067 0.7558689 0.7615552 0.7594244 3 41.72385 202.0153 0.9464992 15 3 1068 1076 0.7622657 0.7679532 0.7672389 3 28.55200 300.9155 0.9465354 17 4 1343 1351 0.9576886 0.9633703 0.9612395 2 41.55313 200.5419 0.9454089 18 2 1352 1360 0.9640808 0.9697651 0.9676334 2 19.61049 317.5010 0.9455040 jfcv2 co2slp o2slp co2sd o2sd 2 1.175878 0.0004088083 0.4825338 0.010405953 4.434831 3 1.175892 -0.0032663476 -0.6500618 0.013928802 3.151569 5 1.175117 -0.0047593537 -2.1733016 0.012917391 8.281145 6 1.175106 0.0004954759 -5.4462559 0.004827474 12.817286 7 1.175091 -0.0063264702 -0.5812660 0.018196508 1.515312 9 1.174656 0.0006803628 -0.4971408 0.006305793 3.835978 10 1.174546 0.0056303267 -1.5805176 0.016170306 4.573968 13 1.174048 0.0015579110 -1.2585573 0.015927016 5.750127 14 1.173982 0.0052774187 1.5360067 0.012080128 5.569743 15 1.173880 0.0043928846 -2.1299813 0.017898877 2.354751 17 1.172726 0.0051331249 1.0355410 0.012792922 4.699615 18 1.172728 -0.0059229142 0.5368882 0.013733628 3.622801 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.532 co2l1 = 0.979 co2l0 = -0.142" [1] "co2l0 = -159.4 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "150 out of 305 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "155 out of 1234 1-min values rejected as stack air" [1] "155 out of 1234 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"