[1] "2025-04-30 02:27:06 MDT" [1] "1702" "170306" "d065" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170306a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84480 63 [1] 84480 [1] 84480 [1] "testing skipping spike filter" [1] 84480 [1] 84480 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:27:10 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.052, ave o2scale2 = 0.844" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "8 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.052, ave o2scale2 = 0.844" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:27:11 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:27:11 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:27:23 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:27:24 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1398 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:27:27 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.981 co2off = 365.54 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 8.18 minutes" [1] "Shortest Cal: 8.18 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 117 125 0.08395200 0.08964141 0.08750770 3 19.62566 326.2038 3 4 126 134 0.09035165 0.09603293 0.09390212 3 41.56045 204.4937 4 3 135 143 0.09674303 0.10242604 0.10171627 3 28.40514 313.4674 6 4 409 417 0.29216866 0.29785567 0.29572065 2 41.52804 198.3797 7 2 418 426 0.29856577 0.30424604 0.30211589 2 19.57948 321.9955 10 2 698 706 0.50031962 0.50599954 0.50386932 3 19.70875 311.5452 11 4 707 715 0.50670992 0.51239705 0.51026672 3 41.68635 199.6634 12 3 716 724 0.51310715 0.51879326 0.51808163 3 28.56232 307.0902 14 4 991 999 0.70848461 0.71416542 0.71203481 2 41.66335 200.8581 15 2 1000 1008 0.71487558 0.72056149 0.71843030 2 19.70312 316.9022 17 2 1281 1289 0.91663223 0.92231513 0.92018478 3 19.41280 317.5663 18 4 1290 1298 0.92302546 0.92870697 0.92657633 3 41.39274 200.5355 20 3 1308 1316 0.93580749 0.94149164 0.94078188 3 28.28265 304.4007 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9536022 1.193769 0.0010857044 0.04126481 0.006642063 3.866245 3 0.9534920 1.193582 -0.0004757910 1.71480472 0.007616665 6.595429 4 0.9535675 1.193359 -0.0086308664 -1.09411663 0.020080363 3.738950 6 0.9522067 1.188929 0.0019539919 -0.96686214 0.007136491 6.871334 7 0.9521926 1.188745 -0.0124409174 0.67544099 0.028727612 5.222796 10 0.9510368 1.183267 0.0015331007 -1.84952421 0.010883737 5.009449 11 0.9508728 1.183094 0.0001331023 -0.57160978 0.005048187 5.109891 12 0.9508713 1.182824 -0.0010987100 6.21552342 0.006508951 6.425205 14 0.9496824 1.179799 0.0010062766 -1.67540683 0.003817766 4.032220 15 0.9497521 1.179754 -0.0026006187 -0.35295542 0.006400931 1.053860 17 0.9484158 1.177330 0.0069440887 0.02568478 0.019750542 2.145114 18 0.9484070 1.177365 0.0051271514 1.16728295 0.014324114 4.867030 20 0.9483605 1.177320 0.0118238585 1.65695511 0.026820848 2.284324 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.472 co2l1 = 0.979 co2l0 = 0.14" [1] "co2l0 = -158.98 co2l1 = 0.213" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "155 out of 335 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "180 out of 1206 1-min values rejected as stack air" [1] "180 out of 1206 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"