[1] "2025-04-30 02:26:22 MDT" [1] "1702" "170304" "d063" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170304a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 49800 63 [1] 49800 [1] 49800 [1] "testing skipping spike filter" [1] 49800 [1] 49800 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:26:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.057, ave o2scale2 = 0.856" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "8 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.057, ave o2scale2 = 0.856" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:26:25 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:26:25 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:26:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:26:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 819 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:26:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.979 co2off = 365.52 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 8.53 minutes" [1] "Shortest Cal: 8.18 minutes" [1] "Longest Cal: 9.22 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 5 6 [3,] 7 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 3 3 11 0.4186406 0.4243261 0.4236158 3 28.49588 311.2969 0.9448763 3 2 12 21 0.4250364 0.4314371 0.4289496 3 19.63697 321.3938 0.9449109 4 4 22 31 0.4321476 0.4385482 0.4360563 3 41.61248 201.4550 0.9448556 5 5 32 41 0.4392587 0.4456518 0.4445863 NA 39.18062 207.4932 0.9448521 7 4 295 303 0.6261292 0.6318194 0.6296862 2 41.64635 204.5506 0.9451288 8 2 304 312 0.6325294 0.6382198 0.6360870 2 19.67404 320.0792 0.9452750 10 2 588 596 0.8343646 0.8400560 0.8379229 3 19.62446 321.1200 0.9466312 11 4 597 605 0.8407670 0.8464529 0.8443202 3 41.58854 206.1722 0.9466653 12 3 606 614 0.8471683 0.8528509 0.8521405 3 28.48515 311.0311 0.9469109 jfcv2 co2slp o2slp co2sd o2sd 2 1.166392 -0.0003674324 9.9153068 0.0068474285 11.035925 3 1.166434 -0.0027192419 0.7297841 0.0085382543 3.291008 4 1.166451 0.0037229422 -0.2859948 0.0102815790 1.692163 5 1.166480 0.0002443594 0.9297867 0.0001767767 2.029016 7 1.167045 0.0013981786 -1.6302777 0.0054692389 4.885338 8 1.167135 -0.0009286591 -0.6697631 0.0085743314 2.421940 10 1.168783 -0.0020300513 -2.3402727 0.0089898566 5.269280 11 1.168932 0.0006237041 -2.4000989 0.0065459826 5.854747 12 1.169043 -0.0024551377 5.2574134 0.0061748458 5.379752 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.435 co2l1 = 0.979 co2l0 = 0.293" [1] "co2l0 = -160.16 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "17 out of 65 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "48 out of 698 1-min values rejected as stack air" [1] "48 out of 698 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"