[1] "2025-04-30 02:25:55 MDT" [1] "1702" "170303" "d062" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170303a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84360 63 [1] 84360 [1] 84360 [1] "testing skipping spike filter" [1] 84360 [1] 84360 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:25:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.063, ave o2scale2 = 0.861" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "27 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.063, ave o2scale2 = 0.861" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "27 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:25:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:25:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:26:12 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:26:14 MDT" [1] "reading in recalculated plot titles" [1] "Removed 27 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1378 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:26:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.979 co2off = 365.34 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.19 minutes" [1] "Average Cal: 7.97 minutes" [1] "Shortest Cal: 7.17 minutes" [1] "Longest Cal: 8.2 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 102 110 0.07258620 0.07826719 0.07613714 2 41.99229 202.4016 3 2 111 119 0.07897694 0.08465616 0.08252602 2 20.00637 322.3400 5 2 395 403 0.28097905 0.28667491 0.28454163 3 19.68472 314.9181 6 4 404 412 0.28738588 0.29307954 0.29094169 3 41.67043 204.8449 8 3 422 430 0.30019002 0.30588356 0.30517272 3 28.52247 302.1772 10 4 686 693 0.48939248 0.49437561 0.49259593 2 41.73309 203.5493 11 2 694 702 0.49579818 0.50148507 0.49935252 2 19.71856 320.0886 13 2 957 964 0.69852697 0.70351045 0.70172928 3 19.78748 322.1349 14 4 965 973 0.70422150 0.70990990 0.70777653 3 41.74746 203.7076 15 3 974 981 0.71062118 0.71560243 0.71524701 3 28.58159 293.2103 17 4 1247 1255 0.90620981 0.91189858 0.90976470 2 41.77083 199.6484 18 2 1256 1264 0.91261516 0.91830269 0.91616985 2 19.78499 320.3907 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9393415 1.160041 0.0051216497 -2.9050315 0.011478054 9.321466 3 0.9394343 1.160053 -0.0078308005 2.2749699 0.018371755 6.418801 5 0.9404995 1.161145 0.0026094026 -1.8069374 0.010342246 5.206650 6 0.9404262 1.161107 -0.0004817190 -0.4934360 0.006040168 6.136413 8 0.9404082 1.161150 -0.0026127464 3.8669452 0.006581704 3.973690 10 0.9411696 1.161797 0.0002578799 1.8140940 0.002836082 5.451034 11 0.9411027 1.161666 -0.0027432507 -0.5987437 0.007294136 3.434294 13 0.9415323 1.162359 -0.0028464027 -1.0102131 0.007353323 3.339883 14 0.9415123 1.162374 0.0048523261 0.1063284 0.011058018 3.315534 15 0.9416571 1.162503 -0.0173347863 -6.0252738 0.033484646 4.361167 17 0.9438996 1.165057 -0.0018683383 -2.2814667 0.007060353 5.362064 18 0.9440776 1.165192 -0.0048338370 -0.4198802 0.014605508 3.260175 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.314 co2l1 = 0.978 co2l0 = -0.048" [1] "co2l0 = -160.25 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "160 out of 330 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "170 out of 1203 1-min values rejected as stack air" [1] "170 out of 1203 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"