[1] "2025-04-30 02:25:25 MDT" [1] "1702" "170302" "d061" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170302a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84420 63 [1] 84420 [1] 84420 [1] "testing skipping spike filter" [1] 84420 [1] 84420 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:25:29 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.065, ave o2scale2 = 0.86" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "24 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.065, ave o2scale2 = 0.86" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "26 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:25:29 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:25:29 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:25:45 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:25:47 MDT" [1] "reading in recalculated plot titles" [1] "Removed 26 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1380 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:25:50 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.978 co2off = 360.96 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 7.57 minutes" [1] "Shortest Cal: 4.09 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 6 [4,] 7 8 [5,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 42 50 0.03769479 0.04337164 0.04124285 1 42.19306 196.8202 7 4 316 324 0.23948174 0.24516493 0.24303419 2 42.10887 205.5971 8 2 325 333 0.24587494 0.25155255 0.24942349 2 20.10718 320.6310 10 2 608 615 0.44833435 0.45331065 0.45153332 3 20.10359 313.7924 11 4 616 624 0.45402167 0.45970888 0.45757595 3 42.11464 200.7402 12 3 625 633 0.46041970 0.46610457 0.46539400 3 28.97735 303.8887 14 4 900 908 0.65597465 0.66166146 0.65952893 2 42.01851 200.7726 15 2 909 917 0.66238009 0.66806574 0.66593348 2 20.01337 321.9648 18 2 1191 1199 0.86433631 0.87002242 0.86788974 3 20.04524 315.4919 19 4 1200 1208 0.87073328 0.87642347 0.87429054 3 42.00171 201.3117 20 3 1209 1217 0.87713435 0.88282321 0.88211061 3 28.86161 302.2036 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 0.9407731 1.172360 0.0063696286 -0.1112590 0.015545129 28.482306 7 0.9398596 1.164216 0.0056545805 -2.7546601 0.014451041 7.048305 8 0.9398591 1.163989 0.0002162401 0.2289385 0.004051978 6.545377 10 0.9394537 1.161231 0.0017564927 0.6496136 0.005344792 8.261583 11 0.9393467 1.161123 0.0021192598 3.3808381 0.005427039 9.935623 12 0.9395554 1.161206 -0.0043959312 -3.5969473 0.011050126 3.680743 14 0.9391939 1.160226 0.0001307460 -0.1891456 0.003998116 5.275141 15 0.9392845 1.160242 -0.0018559818 0.9560846 0.007651848 4.121275 18 0.9387937 1.159400 -0.0063611822 0.2582491 0.015432288 3.791673 19 0.9386758 1.159412 0.0035778747 0.9363201 0.011003660 3.519073 20 0.9388756 1.159462 -0.0010369160 -6.2705819 0.011357456 6.530692 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.029 co2l1 = 0.977 co2l0 = 0.216" [1] "co2l0 = -160.43 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "106 out of 220 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "114 out of 1197 1-min values rejected as stack air" [1] "114 out of 1197 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"