[1] "2025-04-30 02:24:56 MDT" [1] "1702" "170301" "d060" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170301a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84480 63 [1] 84480 [1] 84480 [1] "testing skipping spike filter" [1] 84480 [1] 84480 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:25:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.061, ave o2scale2 = 0.855" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "112 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.061, ave o2scale2 = 0.855" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "112 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:25:01 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:25:01 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:25:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:25:17 MDT" [1] "reading in recalculated plot titles" [1] "Removed 112 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1294 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:25:20 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10100 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.979 co2off = 368.77 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 7.33 minutes" [1] "Shortest Cal: 2.05 minutes" [1] "Longest Cal: 8.18 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 6 [4,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 2 260 267 0.1996072 0.2045844 0.2028069 3 20.78385 326.6739 0.9452990 4 4 268 276 0.2052944 0.2109734 0.2088435 3 42.76454 208.2043 0.9451999 5 3 277 285 0.2116836 0.2173651 0.2166553 3 29.60978 300.6294 0.9452028 7 4 528 536 0.4069971 0.4126765 0.4105467 2 42.55912 217.8445 0.9423331 8 2 537 545 0.4133866 0.4190658 0.4169363 2 20.54403 317.5073 0.9424009 12 4 816 824 0.6214624 0.6271424 0.6250125 1 42.45612 215.4966 0.9419388 15 4 1056 1064 0.8231870 0.8288654 0.8267357 2 42.23802 205.1723 0.9409531 16 2 1065 1073 0.8295755 0.8352576 0.8331271 2 20.21280 298.7142 0.9409564 jfcv2 co2slp o2slp co2sd o2sd 3 1.167315 -0.0054998508 -0.08971725 0.012274826 1.806093 4 1.167196 -0.0013558962 2.25380272 0.007236222 6.453284 5 1.167024 0.0008255487 4.36847121 0.008095367 4.598553 7 1.164930 -0.0071768714 8.23143255 0.015975707 27.332283 8 1.164662 0.0101255776 -5.71581474 0.022889250 13.388314 12 1.167206 0.0004322996 7.84996299 0.005604825 23.489307 15 1.178751 -0.0017380704 10.71160981 0.004920423 24.872411 16 1.178273 -0.0019114893 -6.31939064 0.005593480 21.884217 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 364.651 co2l1 = 0.977 co2l0 = 0.05" [1] "co2l0 = -168.95 co2l1 = 0.251" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "180 out of 340 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "160 out of 1146 1-min values rejected as stack air" [1] "160 out of 1146 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"