[1] "2025-04-30 02:24:33 MDT" [1] "1702" "170218" "d049" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170218a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 31767 63 [1] 31767 [1] 31767 [1] "testing skipping spike filter" [1] 31767 [1] 31767 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:24:34 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.058, ave o2scale2 = 0.856" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.058, ave o2scale2 = 0.856" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "1 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:24:34 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:24:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:24:40 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:24:40 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 527 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:24:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.991 co2off = 361.34 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 8.01 minutes" [1] "Shortest Cal: 7.16 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 71 78 0.05124366 0.05621311 0.05443803 3 19.35884 321.8463 3 4 79 87 0.05692538 0.06260463 0.06047548 3 41.38939 197.6684 5 3 97 105 0.06971340 0.07539115 0.07468146 3 28.26529 311.4075 7 4 363 371 0.25870275 0.26438079 0.26225135 2 41.80263 202.5086 8 2 372 380 0.26509080 0.27076962 0.26864008 2 19.79504 315.9695 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9464430 1.169436 -0.0022620445 -1.2353428 0.005984191 4.443902 3 0.9463027 1.169302 0.0085111162 -0.7043131 0.019081640 2.185511 5 0.9463297 1.169419 0.0005984274 2.0716001 0.006793620 2.154718 7 0.9448994 1.167964 0.0019500823 1.3240751 0.009798519 4.429678 8 0.9449655 1.167967 -0.0048214290 0.6791347 0.011526625 5.172978 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 365.537 co2l1 = 0.977 co2l0 = 0.355" [1] "co2l0 = -158.7 co2l1 = 0.212" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "11 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "9 out of 457 1-min values rejected as stack air" [1] "9 out of 457 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"