[1] "2025-04-30 02:24:02 MDT" [1] "1702" "170217" "d048" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170217a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84480 63 [1] 84480 [1] 84480 [1] "testing skipping spike filter" [1] 84480 [1] 84480 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:24:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.057, ave o2scale2 = 0.855" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.057, ave o2scale2 = 0.855" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "7 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:24:07 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:24:07 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:24:21 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:24:22 MDT" [1] "reading in recalculated plot titles" [1] "Removed 7 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1399 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:24:27 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.982 co2off = 362.13 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 7.95 minutes" [1] "Shortest Cal: 7.15 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 13 21 0.009932841 0.01561710 0.01348476 2 40.22292 201.0676 3 2 22 29 0.016328125 0.02130865 0.01953104 2 18.24692 317.7421 5 2 303 311 0.218115133 0.22379358 0.22166409 3 18.43320 322.4990 6 4 312 320 0.224503414 0.23018799 0.22805665 3 40.39919 193.0871 7 3 321 329 0.230897917 0.23657558 0.23586600 3 27.31717 297.1729 9 4 596 604 0.426206163 0.43189149 0.42976177 2 40.77069 201.2676 10 2 605 613 0.432601591 0.43828368 0.43615139 2 18.80750 317.2939 13 2 889 896 0.635014815 0.63999129 0.63821526 3 18.89317 316.0296 14 4 897 905 0.640701215 0.64637995 0.64425015 3 40.86638 202.4195 15 3 906 914 0.647090625 0.65277503 0.65206529 3 27.74410 309.3384 17 4 1180 1188 0.842417477 0.84810408 0.84596914 2 41.20082 203.0393 18 2 1189 1196 0.848814091 0.85378220 0.85200796 2 19.21201 307.0740 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9482541 1.170982 0.007376865 0.5420552 0.019176901 4.5290606 3 0.9482035 1.170918 -0.009606268 -0.5889955 0.024267831 2.1227603 5 0.9473041 1.170250 -0.003862841 5.9662760 0.010354236 20.9473001 6 0.9472333 1.170109 0.008881334 5.1433450 0.020056106 14.3639532 7 0.9472760 1.170074 -0.002476768 1.2936614 0.010064358 3.4421453 9 0.9458005 1.169227 0.005575193 -0.4160487 0.016965114 4.4695522 10 0.9458746 1.169241 -0.003966281 -2.2814112 0.011810185 6.7983650 13 0.9460651 1.169481 0.004137032 -0.6964152 0.008546168 6.1074597 14 0.9460899 1.169544 0.004146559 1.8339364 0.009323539 4.6579964 15 0.9462185 1.169526 -0.005346705 -0.0996017 0.016437692 0.3769078 17 0.9470128 1.170375 0.002263046 0.2675942 0.008679060 2.2687208 18 0.9471214 1.170489 -0.007312265 2.4833399 0.015226951 14.3972838 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 366.347 co2l1 = 0.979 co2l0 = 0.254" [1] "co2l0 = -160.04 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "41 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "9 out of 1233 1-min values rejected as stack air" [1] "9 out of 1233 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"