[1] "2025-04-30 02:23:33 MDT" [1] "1702" "170216" "d047" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170216a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84420 63 [1] 84420 [1] 84420 [1] "testing skipping spike filter" [1] 84420 [1] 84420 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:23:37 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.045, ave o2scale2 = 0.849" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.045, ave o2scale2 = 0.849" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:23:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:23:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:23:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:23:54 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 20 row(s) with high TFRIDGE" [1] "TEMP: 1373 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:23:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 1.006 co2off = 367.85 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.18 minutes" [1] "Average Cal: 7.59 minutes" [1] "Shortest Cal: 6.13 minutes" [1] "Longest Cal: 8.19 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 228 236 0.1772527 0.1829331 0.1808026 2 37.71488 202.4858 0.9623605 3 2 237 244 0.1836433 0.1886856 0.1869057 2 15.80478 308.4203 0.9623325 6 2 517 525 0.3854827 0.3911668 0.3890366 3 16.17520 316.2668 0.9599820 7 4 526 534 0.3918769 0.3975636 0.3954277 3 38.12071 202.4611 0.9598376 8 3 535 543 0.3982750 0.4039542 0.4032445 3 25.08204 302.4218 0.9599341 10 4 810 818 0.5936523 0.5993396 0.5972066 2 38.73737 203.6058 0.9562462 11 2 819 827 0.6000497 0.6057290 0.6035992 2 16.81257 319.7614 0.9562503 13 2 1101 1109 0.8018049 0.8074947 0.8053559 3 16.96183 315.9210 0.9517637 14 4 1110 1117 0.8082048 0.8131741 0.8113994 3 38.93825 192.6109 0.9515114 16 3 1125 1132 0.8216964 0.8266654 0.8263105 3 25.86194 306.0537 0.9511946 jfcv2 co2slp o2slp co2sd o2sd 2 1.182967 -9.649550e-04 -0.6743070 0.004406941 3.263349 3 1.182924 5.280681e-03 -0.8618124 0.017395525 9.323572 6 1.180815 1.371091e-05 -1.0953886 0.004180720 3.096674 7 1.180726 2.271113e-03 -0.4004576 0.007487912 5.058447 8 1.180718 3.128986e-03 -1.0595438 0.008142266 1.218039 10 1.177788 -6.145992e-03 -0.4085147 0.015485857 1.486965 11 1.177740 -3.118371e-03 0.8933635 0.016160427 4.445870 13 1.173329 -8.132276e-04 0.8113047 0.023618240 6.596042 14 1.173071 4.412690e-03 0.2916613 0.013366060 2.307746 16 1.172778 3.923849e-03 -1.7699375 0.011878421 1.279381 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 368.544 co2l1 = 0.98 co2l0 = 0.426" [1] "co2l0 = -160.38 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "208 out of 570 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "362 out of 1225 1-min values rejected as stack air" [1] "362 out of 1225 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"