[1] "2017-09-21 10:28:07 MDT"
[1] "1702"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1702/170215.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1702/170216.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1702/170217.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1702/170218.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1702/170228.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1702/170301.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1702/170302.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1702/170303.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1702/170304.html"  
[10] "/net/www/docs/homes/stephens/GO2/1702/170305.html"  
[11] "/net/www/docs/homes/stephens/GO2/1702/170306.html"  
[12] "/net/www/docs/homes/stephens/GO2/1702/170307.html"  
[13] "/net/www/docs/homes/stephens/GO2/1702/170308.html"  
[14] "/net/www/docs/homes/stephens/GO2/1702/170309.html"  
[15] "/net/www/docs/homes/stephens/GO2/1702/170310.html"  
[16] "/net/www/docs/homes/stephens/GO2/1702/170311.html"  
[17] "/net/www/docs/homes/stephens/GO2/1702/170312.html"  
[18] "/net/www/docs/homes/stephens/GO2/1702/170313.html"  
[19] "/net/www/docs/homes/stephens/GO2/1702/170314.html"  
[20] "/net/www/docs/homes/stephens/GO2/1702/170315.html"  
[21] "/net/www/docs/homes/stephens/GO2/1702/170316.html"  
[22] "/net/www/docs/homes/stephens/GO2/1702/170317.html"  
[23] "/net/www/docs/homes/stephens/GO2/1702/170318.html"  
[24] "/net/www/docs/homes/stephens/GO2/1702/170319.html"  
[25] "/net/www/docs/homes/stephens/GO2/1702/170320.html"  
[26] "/net/www/docs/homes/stephens/GO2/1702/lmg_1702.html"
 [1] "/net/www/docs/homes/stephens/GO2/1702/170215.html"
 [2] "/net/www/docs/homes/stephens/GO2/1702/170216.html"
 [3] "/net/www/docs/homes/stephens/GO2/1702/170217.html"
 [4] "/net/www/docs/homes/stephens/GO2/1702/170218.html"
 [5] "/net/www/docs/homes/stephens/GO2/1702/170228.html"
 [6] "/net/www/docs/homes/stephens/GO2/1702/170301.html"
 [7] "/net/www/docs/homes/stephens/GO2/1702/170302.html"
 [8] "/net/www/docs/homes/stephens/GO2/1702/170303.html"
 [9] "/net/www/docs/homes/stephens/GO2/1702/170304.html"
[10] "/net/www/docs/homes/stephens/GO2/1702/170305.html"
[11] "/net/www/docs/homes/stephens/GO2/1702/170306.html"
[12] "/net/www/docs/homes/stephens/GO2/1702/170307.html"
[13] "/net/www/docs/homes/stephens/GO2/1702/170308.html"
[14] "/net/www/docs/homes/stephens/GO2/1702/170309.html"
[15] "/net/www/docs/homes/stephens/GO2/1702/170310.html"
[16] "/net/www/docs/homes/stephens/GO2/1702/170311.html"
[17] "/net/www/docs/homes/stephens/GO2/1702/170312.html"
[18] "/net/www/docs/homes/stephens/GO2/1702/170313.html"
[19] "/net/www/docs/homes/stephens/GO2/1702/170314.html"
[20] "/net/www/docs/homes/stephens/GO2/1702/170315.html"
[21] "/net/www/docs/homes/stephens/GO2/1702/170316.html"
[22] "/net/www/docs/homes/stephens/GO2/1702/170317.html"
[23] "/net/www/docs/homes/stephens/GO2/1702/170318.html"
[24] "/net/www/docs/homes/stephens/GO2/1702/170319.html"
[25] "/net/www/docs/homes/stephens/GO2/1702/170320.html"
[1] "170215" "170320"
 [1] "170215" "170216" "170217" "170218" "170228" "170301" "170302" "170303"
 [9] "170304" "170305" "170306" "170307" "170308" "170309" "170310" "170311"
[17] "170312" "170313" "170314" "170315" "170316" "170317" "170318" "170319"
[25] "170320"
[1] "000000" "999999"
[1] "170215_mr_proc.txt, 170215_cal_periods.txt, 170215_cal_param.txt,191jogs"
[1] "170216_mr_proc.txt, 170216_cal_periods.txt, 170216_cal_param.txt,1373jogs"
[1] "170217_mr_proc.txt, 170217_cal_periods.txt, 170217_cal_param.txt,1399jogs"
[1] "170218_mr_proc.txt, 170218_cal_periods.txt, 170218_cal_param.txt,527jogs"
[1] "170228_mr_proc.txt, 170228_cal_periods.txt, 170228_cal_param.txt,281jogs"
[1] "170301_mr_proc.txt, 170301_cal_periods.txt, 170301_cal_param.txt,1296jogs"
[1] "170302_mr_proc.txt, 170302_cal_periods.txt, 170302_cal_param.txt,1380jogs"
[1] "170303_mr_proc.txt, 170303_cal_periods.txt, 170303_cal_param.txt,1378jogs"
[1] "170304_mr_proc.txt, 170304_cal_periods.txt, 170304_cal_param.txt,819jogs"
[1] "170305_mr_proc.txt, 170305_cal_periods.txt, 170305_cal_param.txt,1327jogs"
[1] "170306_mr_proc.txt, 170306_cal_periods.txt, 170306_cal_param.txt,1398jogs"
[1] "170307_mr_proc.txt, 170307_cal_periods.txt, 170307_cal_param.txt,1402jogs"
[1] "170308_mr_proc.txt, 170308_cal_periods.txt, 170308_cal_param.txt,1401jogs"
[1] "170309_mr_proc.txt, 170309_cal_periods.txt, 170309_cal_param.txt,1382jogs"
[1] "170310_mr_proc.txt, 170310_cal_periods.txt, 170310_cal_param.txt,1401jogs"
[1] "170311_mr_proc.txt, 170311_cal_periods.txt, 170311_cal_param.txt,1387jogs"
[1] "170312_mr_proc.txt, 170312_cal_periods.txt, 170312_cal_param.txt,1386jogs"
[1] "170313_mr_proc.txt, 170313_cal_periods.txt, 170313_cal_param.txt,1338jogs"
[1] "170314_mr_proc.txt, 170314_cal_periods.txt, 170314_cal_param.txt,1395jogs"
[1] "170315_mr_proc.txt, 170315_cal_periods.txt, 170315_cal_param.txt,1401jogs"
[1] "170316_mr_proc.txt, 170316_cal_periods.txt, 170316_cal_param.txt,1398jogs"
[1] "170317_mr_proc.txt, 170317_cal_periods.txt, 170317_cal_param.txt,1369jogs"
[1] "170318_mr_proc.txt, 170318_cal_periods.txt, 170318_cal_param.txt,683jogs"
[1] "170319_mr_proc.txt, 170319_cal_periods.txt, 170319_cal_param.txt,1356jogs"
[1] "170320_mr_proc.txt, 170320_cal_periods.txt, 170320_cal_param.txt,827jogs"
[1] "170215" "170320" "d046"   "d079"  
[1] "Calculating derived concentration values"
[1] "2017-09-21 10:29:22 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 1.062, ave o2scale2 = 0.857"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-09-21 10:29:53 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-09-21 10:30:34 MDT"
[1] "2017-09-21 10:30:43 MDT"
[1] "Reading in cylinder log"
Read 74 records
[1] "Finding cylinder IDs"
Read 428 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 384.49 O2 = -529.9"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.97 O2 = -656.2"
[1] "position 4 cylinder CB08905 description: LT CO2 = 404.14 O2 = -661.5"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1702 Valve transient for  Line 1 after Cal = -0.71 , -0.32 , 0.02 , 0.01 , 0 n = 102"
[1] "1702 Valve transient for  Line 1 after HS = -1.72 , -0.84 , 0.03 , 0.02 , 0.03 n = 33"
[1] "1702 Valve transient for  Line 1 after MS = -0.82 , -0.4 , -0.01 , 0 , 0 n = 47"
[1] "1702 Valve transient for  Line 1 after LS = 0 , 0 , 0 , 0 , 0 n = 1"
[1] "1702 Valve transient for  Line 1 after LT = 2.58 , 1.98 , 0.8 , 0.07 , 0.04 n = 21"
[1] "1702 Valve transient for  HS after Line 1 = 0.78 , 0.4 , 0.01 , 0 , 0 n = 34"
[1] "1702 Valve transient for  HS after MS = 1.33 , 0.64 , -0.03 , -0.03 , -0.03 n = 3"
[1] "1702 Valve transient for  HS after LS = 3.41 , 1.72 , 0.02 , 0 , 0 n = 40"
[1] "1702 Valve transient for  MS after Line 1 = -0.13 , -0.08 , -0.02 , 0 , 0 n = 2"
[1] "1702 Valve transient for  MS after LS = 2.02 , 1.02 , 0 , 0 , 0.01 n = 31"
[1] "1702 Valve transient for  MS after LT = 1.8 , 0.91 , 0.01 , 0 , 0 n = 11"
[1] "1702 Valve transient for  LS after Line 1 = -1.5 , -0.74 , 0 , 0 , 0 n = 40"
[1] "1702 Valve transient for  LS after HS = -3.5 , -1.76 , -0.01 , 0 , 0 n = 45"
[1] "1702 Valve transient for  LT after HS = -1.16 , -0.57 , 0.03 , 0.03 , 0.02 n = 15"
[1] "1702 Valve transient for  LT after LS = 0.15 , 0.1 , 0.03 , 0.03 , 0.03 n = 15"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "883 out of 6520 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "5637 out of 25774 1-min values rejected as stack air"
[1] "5637 out of 25774 Line 1 1-min values rejected as stack air"
[1] "0 out of 0 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1702loxy.d046"
[1] "LMG1702loxy.d047"
[1] "LMG1702loxy.d048"
[1] "LMG1702loxy.d049"
[1] "LMG1702loxy.d050"
[1] "LMG1702loxy.d051"
[1] "LMG1702loxy.d052"
[1] "LMG1702loxy.d053"
[1] "LMG1702loxy.d054"
[1] "LMG1702loxy.d055"
[1] "LMG1702loxy.d056"
[1] "LMG1702loxy.d057"
[1] "LMG1702loxy.d058"
[1] "LMG1702loxy.d059"
[1] "LMG1702loxy.d060"
[1] "LMG1702loxy.d061"
[1] "LMG1702loxy.d062"
[1] "LMG1702loxy.d063"
[1] "LMG1702loxy.d064"
[1] "LMG1702loxy.d065"
[1] "LMG1702loxy.d066"
[1] "LMG1702loxy.d067"
[1] "LMG1702loxy.d068"
[1] "LMG1702loxy.d069"
[1] "LMG1702loxy.d070"
[1] "LMG1702loxy.d071"
[1] "LMG1702loxy.d072"
[1] "LMG1702loxy.d073"
[1] "LMG1702loxy.d074"
[1] "LMG1702loxy.d075"
[1] "LMG1702loxy.d076"
[1] "LMG1702loxy.d077"
[1] "LMG1702loxy.d078"
[1] "LMG1702loxy.d079"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  97.5 2.3622047
 [2,] 102.5 2.3622047
 [3,] 107.5 1.5748031
 [4,] 117.5 1.5748031
 [5,] 122.5 2.3622047
 [6,] 127.5 2.3622047
 [7,] 132.5 0.7874016
 [8,] 137.5 1.5748031
 [9,] 142.5 2.3622047
[10,] 147.5 1.5748031
[11,] 152.5 0.7874016
[12,] 157.5 1.5748031
[13,] 162.5 2.3622047
[14,] 167.5 1.5748031
[15,] 172.5 1.5748031
[16,] 177.5 1.5748031
[17,] 182.5 2.3622047
[18,] 187.5 2.3622047
[19,] 192.5 1.5748031
[20,] 197.5 3.9370079
[21,] 202.5 1.5748031
[22,] 207.5 0.7874016
[23,] 212.5 1.5748031
[24,] 217.5 2.3622047
[25,] 222.5 1.5748031
[26,] 227.5 1.5748031
[27,] 232.5 0.7874016
[28,] 237.5 1.5748031
[29,] 242.5 1.5748031
[30,] 247.5 1.5748031
[31,] 252.5 0.0000000
[32,] 257.5 2.3622047
[33,] 262.5 0.7874016
[34,] 272.5 2.3622047
[35,] 277.5 0.7874016
[36,] 282.5 1.5748031
[37,] 287.5 2.3622047
[38,] 292.5 1.5748031
[39,] 297.5 2.3622047
[40,] 302.5 0.7874016
[41,] 307.5 0.7874016
[42,] 327.5 0.7874016
[43,] 377.5 1.5748031
[44,] 382.5 2.3622047
[45,] 387.5 1.5748031
[46,] 392.5 1.5748031
[47,] 397.5 1.5748031
[48,] 402.5 2.3622047
[49,] 407.5 1.5748031
[50,] 412.5 2.3622047
[51,] 417.5 1.5748031
[52,] 422.5 2.3622047
[53,] 427.5 1.5748031
[54,] 432.5 2.3622047
[55,] 437.5 1.5748031
[56,] 442.5 1.5748031
      [,1]      [,2]
[1,] 182.5 0.7874016
[2,] 192.5 1.5748031
[3,] 222.5 0.7874016
[4,] 337.5 0.7874016
     [,1] [,2]
     [,1] [,2]
[1] "making cruise html"
[1] "2017-09-21 10:32:00 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"