[1] "2025-04-30 02:19:42 MDT" [1] "1701" "170126" "d026" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170126a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82560 63 [1] 82560 [1] 82560 [1] "testing skipping spike filter" [1] 82560 [1] 82560 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:19:46 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.071, ave o2scale2 = 0.862" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "22 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.071, ave o2scale2 = 0.862" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:19:46 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:19:46 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:19:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:20:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1352 36 TRUE" [1] "Removed 36 row(s) with -999.99 for a Licor jog SD" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:20:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 428.62 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.21 minutes" [1] "Average Cal: 8.01 minutes" [1] "Shortest Cal: 7.2 minutes" [1] "Longest Cal: 8.26 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 38 46 0.02832106 0.03405854 0.03189948 3 -40.71173 232.9001 3 4 47 55 0.03476910 0.04047541 0.03833907 3 -18.40339 116.2629 4 3 56 63 0.04118605 0.04620755 0.04584773 3 -31.73197 221.4286 6 4 326 333 0.23755532 0.24261319 0.24081324 2 -18.58671 114.0528 7 2 334 342 0.24332231 0.24905712 0.24690305 2 -40.92687 232.2968 9 2 615 623 0.44485023 0.45053322 0.44840183 3 -41.11579 228.7172 10 4 624 632 0.45124233 0.45697517 0.45482905 3 -18.80004 110.5137 12 3 642 650 0.46409685 0.46979326 0.46908388 3 -32.14023 207.5382 14 4 904 911 0.65398001 0.65898079 0.65719064 2 -19.02021 123.7312 15 2 912 920 0.65969008 0.66539705 0.66325230 2 -41.33538 230.3061 17 2 1186 1193 0.86149375 0.86719034 0.86517413 2 -41.13839 213.6227 18 4 1194 1202 0.86790804 0.87362697 0.87148917 2 -18.83761 120.4918 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9413166 1.165409 -0.0018624084 0.5858878 0.005017121 3.924158 3 0.9411370 1.165242 0.0006850434 -2.6982294 0.003889039 10.417877 4 0.9410792 1.165152 0.0029547851 -3.0442263 0.006935501 2.230714 6 0.9382191 1.162239 -0.0040618117 0.6948041 0.008953322 3.380527 7 0.9381446 1.162101 -0.0058272817 -0.9348476 0.013379888 2.479544 9 0.9342125 1.158490 0.0016197857 -5.1336253 0.006512094 12.899166 10 0.9340142 1.158435 0.0037371923 2.2849752 0.009182528 14.534451 12 0.9337320 1.158249 -0.0054611667 0.7465277 0.012980490 1.076706 14 0.9293908 1.154845 -0.0005389716 0.5782206 0.002855824 9.257359 15 0.9294014 1.154938 -0.0023575580 -2.8323543 0.007416499 8.862664 17 0.9290734 1.161497 -0.0012397490 8.4055718 0.006465117 28.424202 18 0.9290021 1.161748 0.0045449748 -4.9714532 0.010560818 19.066623 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 424.216 co2l1 = 0.963 co2l0 = 0.209" [1] "co2l0 = -143.32 co2l1 = 0.231" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "117 out of 365 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "248 out of 1152 1-min values rejected as stack air" [1] "248 out of 1152 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"