[1] "2025-04-30 02:19:15 MDT" [1] "1701" "170125" "d025" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170125a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83880 63 [1] 83880 [1] 83880 [1] "testing skipping spike filter" [1] 83880 [1] 83880 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:19:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.061, ave o2scale2 = 0.857" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "17 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.061, ave o2scale2 = 0.857" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "17 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:19:19 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:19:19 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:19:32 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:19:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 17 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1380 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:19:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 419.93 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.23 minutes" [1] "Average Cal: 7.89 minutes" [1] "Shortest Cal: 7.17 minutes" [1] "Longest Cal: 8.27 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 264 271 0.1954640 0.2011982 0.1990513 3 -40.88372 233.5292 3 4 272 280 0.2019118 0.2076350 0.2054848 3 -18.58749 111.2178 5 3 290 298 0.2147864 0.2205027 0.2197928 3 -31.91017 208.8696 7 4 552 559 0.4046582 0.4096570 0.4078713 2 -18.69044 115.6705 8 2 560 567 0.4103753 0.4153520 0.4135761 2 -41.00441 215.6425 10 2 840 847 0.6128598 0.6178748 0.6160793 3 -41.00531 227.8387 11 4 848 856 0.6185913 0.6242882 0.6221514 3 -18.70613 115.6776 12 3 857 865 0.6250019 0.6307423 0.6300259 3 -32.04401 216.6031 14 4 1131 1138 0.8211060 0.8261091 0.8243268 2 -18.63103 114.8463 15 2 1139 1147 0.8268193 0.8325495 0.8303999 2 -40.93728 230.1598 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9442697 1.168349 -0.0042969732 -0.9502592 0.011040721 6.949388 3 0.9441877 1.168153 0.0051004696 -0.1155517 0.011592721 4.754502 5 0.9441089 1.168024 -0.0030213873 -2.3778415 0.007864222 2.432337 7 0.9427999 1.166774 0.0017845768 2.5700718 0.004093440 6.134751 8 0.9428882 1.166804 -0.0053771634 -4.6891243 0.010661243 9.478630 10 0.9428261 1.166281 0.0020209232 -1.1622933 0.004007610 6.678737 11 0.9426692 1.166143 0.0010409373 0.7241512 0.007131615 9.016271 12 0.9426248 1.165958 -0.0002493102 -0.2722206 0.004894117 1.032190 14 0.9419628 1.165850 0.0016215048 0.7931543 0.004482039 2.162024 15 0.9421056 1.166086 -0.0027189605 0.7891889 0.009529071 3.836217 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 424.152 co2l1 = 0.964 co2l0 = 0.105" [1] "co2l0 = -142.2 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "48 out of 150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "102 out of 1230 1-min values rejected as stack air" [1] "102 out of 1230 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"