[1] "2025-04-30 02:18:47 MDT" [1] "1701" "170124" "d024" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170124a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83940 63 [1] 83940 [1] 83940 [1] "testing skipping spike filter" [1] 83940 [1] 83940 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:18:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.056, ave o2scale2 = 0.854" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "54 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.056, ave o2scale2 = 0.854" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "54 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:18:52 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:18:52 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:19:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:19:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 54 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1344 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:19:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -647.9" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 428.18 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.22 minutes" [1] "Average Cal: 7.85 minutes" [1] "Shortest Cal: 6.17 minutes" [1] "Longest Cal: 8.3 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 214 222 0.1552649 0.1609855 0.1588373 2 -18.32560 108.7379 3 2 223 231 0.1617903 0.1675423 0.1653941 2 -40.64227 228.3135 5 2 504 511 0.3639184 0.3689167 0.3671287 3 -40.64323 236.3235 6 4 512 520 0.3696352 0.3753635 0.3732070 3 -18.34869 120.2829 7 3 521 528 0.3760822 0.3811014 0.3807443 3 -31.68523 217.9474 9 4 788 796 0.5713419 0.5770536 0.5749122 2 -18.38159 116.2852 10 2 797 805 0.5777649 0.5835258 0.5813637 2 -40.68407 234.1559 13 2 1068 1075 0.7793204 0.7850289 0.7827681 3 -40.64526 223.8166 14 4 1076 1081 0.7857562 0.7900380 0.7887846 3 -18.32314 129.8295 15 3 1082 1089 0.7921659 0.7978700 0.7975114 3 -31.67732 216.2082 17 4 1328 1335 0.9882304 0.9932461 0.9914465 2 -18.24725 117.8093 18 2 1336 1344 0.9939563 0.9996916 0.9975489 2 -40.54895 237.2951 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9465884 1.170118 -0.0009933951 -2.53901418 0.003493830 10.5177341 3 0.9466311 1.170121 -0.0033989510 1.44290926 0.009295546 4.5454325 5 0.9468151 1.170609 -0.0029565503 1.26214060 0.005914055 3.4980176 6 0.9467268 1.170530 0.0005422760 -1.02525189 0.001441570 5.0323601 7 0.9468704 1.170681 0.0011943799 -1.54804640 0.002390628 1.1257856 9 0.9473405 1.171465 0.0004945485 0.05430130 0.002641283 3.7232450 10 0.9475399 1.171641 -0.0029822215 0.04973861 0.007560643 1.9604686 13 0.9480296 1.172416 -0.0019705911 1.11649572 0.004900973 3.1038228 14 0.9480260 1.172456 0.0060603622 -0.05625780 0.012671040 18.7914613 15 0.9480541 1.172383 -0.0016596734 1.34548576 0.004793651 0.9825605 17 0.9466936 1.170821 0.0009567920 -0.32100072 0.002500312 1.5953340 18 0.9466643 1.170764 -0.0018116992 1.11917712 0.004964907 5.3197789 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 423.834 co2l1 = 0.964 co2l0 = 0.043" [1] "co2l0 = -143.02 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "56 out of 243 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "187 out of 1188 1-min values rejected as stack air" [1] "187 out of 1188 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"