[1] "2025-04-30 02:18:19 MDT" [1] "1701" "170123" "d023" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170123a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83940 63 [1] 83940 [1] 83940 [1] "testing skipping spike filter" [1] 83940 [1] 83940 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:18:23 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.055, ave o2scale2 = 0.854" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "8 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.055, ave o2scale2 = 0.854" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:18:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:18:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:18:36 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:18:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 9 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 247 row(s) with high TFRIDGE" [1] "TEMP: 1142 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:18:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 423.86 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.21 minutes" [1] "Average Cal: 8.05 minutes" [1] "Shortest Cal: 7.19 minutes" [1] "Longest Cal: 8.29 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 199 206 0.3226429 0.3276603 0.3258636 2 -17.96949 111.4545 3 2 207 215 0.3283770 0.3341062 0.3319567 2 -40.29872 217.8021 4 5 216 223 0.3348186 0.3398128 0.3394583 NA -20.24356 113.4319 6 2 488 496 0.5299944 0.5357541 0.5335902 3 -40.55658 231.2904 7 4 497 505 0.5364717 0.5421701 0.5400330 3 -18.25844 119.7617 8 3 506 514 0.5428792 0.5485937 0.5478809 3 -31.59603 214.8729 10 4 779 787 0.7384788 0.7441763 0.7420363 2 -18.32475 114.6945 11 2 788 795 0.7448925 0.7505747 0.7487943 2 -40.62475 229.5483 13 2 1069 1077 0.9469700 0.9526760 0.9505317 3 -40.62279 229.8428 14 4 1078 1086 0.9533887 0.9590877 0.9569578 3 -18.31298 113.2357 16 3 1096 1104 0.9662103 0.9719144 0.9711977 3 -31.65789 208.4925 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9481105 1.171302 -0.0023598636 -0.77494529 0.004677642 3.6873690 3 0.9482312 1.171472 -0.0049404529 5.55452984 0.011225080 18.8748284 4 0.9482165 1.171480 -0.1875153049 0.68358861 0.270733509 0.4934202 6 0.9483082 1.171899 -0.0001677234 1.69494205 0.001509395 5.0909951 7 0.9482574 1.171769 0.0014222788 0.62297352 0.004691804 6.9043746 8 0.9482017 1.171790 -0.0015407512 -1.27375107 0.003946065 1.4867584 10 0.9479701 1.171573 -0.0007913120 -0.23246160 0.002640825 2.9297745 11 0.9479025 1.171475 -0.0034522855 3.86464243 0.007465303 7.8312962 13 0.9471508 1.170715 -0.0010400579 -1.37458064 0.004175177 3.9102275 14 0.9471396 1.170618 0.0049293742 0.08709696 0.013634635 2.5022979 16 0.9472725 1.170754 -0.0032829640 0.47004294 0.008065383 1.3063081 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 423.729 co2l1 = 0.964 co2l0 = 0.066" [1] "co2l0 = -142.28 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "26 out of 65 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "39 out of 990 1-min values rejected as stack air" [1] "39 out of 990 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"