[1] "2025-04-30 02:17:56 MDT" [1] "1701" "170122" "d022" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170122a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82880 63 [1] 82880 [1] 82880 [1] "testing skipping spike filter" [1] 82880 [1] 82880 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:17:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.056, ave o2scale2 = 0.855" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.056, ave o2scale2 = 0.855" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:18:00 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:18:00 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:18:09 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:18:11 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1367 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:18:13 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 419.65 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.27 minutes" [1] "Average Cal: 8.4 minutes" [1] "Shortest Cal: 7.26 minutes" [1] "Longest Cal: 9.29 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 11 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 108 116 0.07789965 0.08361606 0.08146965 3 -40.57968 233.1272 3 4 117 125 0.08432488 0.09005509 0.08790646 3 -18.27704 120.9411 4 3 126 134 0.09077896 0.09653241 0.09581782 3 -31.62264 214.7651 6 4 398 406 0.28628750 0.29206247 0.28990022 2 -18.25393 113.1932 7 2 407 415 0.29278600 0.29852758 0.29636388 2 -40.55329 230.7433 10 2 681 689 0.49426907 0.50003319 0.49785756 3 -40.58039 231.8011 11 4 690 698 0.50076073 0.50647214 0.50433874 3 -18.26855 108.7368 12 3 699 707 0.50718186 0.51292321 0.51221124 3 -31.59945 218.8367 14 3 951 959 0.69774300 0.70345894 0.70274801 3 -31.50860 214.9988 15 2 960 969 0.70417326 0.71062766 0.70811837 3 -40.48493 230.8174 16 4 970 979 0.71134421 0.71777543 0.71526970 3 -18.17173 115.7765 17 5 980 989 0.71850417 0.72492674 0.72385607 NA -20.44347 111.2339 19 4 1240 1248 0.90554774 0.91127876 0.90912489 2 -18.02655 120.4167 20 2 1249 1256 0.91198950 0.91702865 0.91522820 2 -40.33643 228.9787 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9461952 1.168695 -0.0010851908 2.5748833 0.003075743 5.7989053 3 0.9460980 1.168515 0.0025636990 -2.3813708 0.006418647 5.6487692 4 0.9460702 1.168570 -0.0015774060 -3.5488469 0.003646616 3.9872376 6 0.9463078 1.168536 0.0011542304 0.1512254 0.003863462 14.3091730 7 0.9463985 1.168630 -0.0002012004 -0.4397957 0.003496624 1.4045625 10 0.9468557 1.168952 -0.0026072096 2.9493321 0.006063865 6.6751981 11 0.9468043 1.168908 0.0024712978 0.6254783 0.008561924 11.3536923 12 0.9468386 1.168874 -0.0010909521 6.9275983 0.003185544 7.1116407 14 0.9472577 1.169813 0.0010978172 0.1615658 0.004181254 0.8380865 15 0.9473800 1.169923 0.0017818394 -0.2223162 0.005445390 4.3917670 16 0.9473780 1.169926 0.0003113197 -1.9129623 0.002053348 8.4404725 17 0.9474080 1.169960 -0.0058766509 2.7970438 0.004286835 4.4505464 19 0.9479886 1.170814 -0.0015069059 1.6511030 0.006028300 4.1679496 20 0.9480124 1.170824 -0.0037410850 -0.1210764 0.007602982 5.3823644 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 423.713 co2l1 = 0.964 co2l0 = 0.095" [1] "co2l0 = -141.82 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "84 out of 425 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "341 out of 1163 1-min values rejected as stack air" [1] "341 out of 1163 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"