[1] "2025-04-30 02:17:29 MDT" [1] "1701" "170121" "d021" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170121a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83460 63 [1] 83460 [1] 83460 [1] "testing skipping spike filter" [1] 83460 [1] 83460 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:17:33 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.054, ave o2scale2 = 0.853" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "40 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.054, ave o2scale2 = 0.853" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "42 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:17:34 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:17:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:17:46 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:17:47 MDT" [1] "reading in recalculated plot titles" [1] "Removed 42 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1348 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:17:50 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.967 co2off = 428.11 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.27 minutes" [1] "Average Cal: 7.85 minutes" [1] "Shortest Cal: 5.22 minutes" [1] "Longest Cal: 8.36 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 44 52 0.03674847 0.04251672 0.04035235 2 -17.75421 111.6202 3 2 53 61 0.04322726 0.04894867 0.04680012 2 -40.07023 222.6468 4 5 62 69 0.04966794 0.05473617 0.05437283 NA -19.92969 109.5368 6 2 315 323 0.24468006 0.25048675 0.24831085 3 -40.12536 237.2947 7 4 324 329 0.25339745 0.25702130 0.25594329 3 -17.78691 107.9262 8 3 330 338 0.25774910 0.26352332 0.26280850 3 -31.13512 221.6361 10 4 590 596 0.45422613 0.45854123 0.45710606 2 -17.97920 108.4308 11 2 597 605 0.45925315 0.46499711 0.46284370 2 -40.29301 231.2188 13 2 878 886 0.66115923 0.66689248 0.66474097 3 -40.40418 228.1921 14 4 887 895 0.66760639 0.67335955 0.67120081 3 -18.09733 118.7832 16 3 905 913 0.68054795 0.68627876 0.68555910 3 -31.44008 215.3598 18 4 1167 1175 0.86956777 0.87531308 0.87315445 2 -18.17372 114.3583 19 2 1176 1184 0.87602569 0.88177008 0.87961473 2 -40.49927 233.7231 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9516024 1.176196 -0.002480031 2.1863377 0.005753816 9.5957411 3 0.9516921 1.176181 -0.001904950 1.5434342 0.007350570 10.8341026 4 0.9516236 1.176181 -0.142563109 -0.9725378 0.208154559 0.7196083 6 0.9498964 1.173505 -0.001797076 -2.4401951 0.005145628 7.2807232 7 0.9503233 1.174057 0.001324491 -0.1126777 0.001776950 0.6328139 8 0.9504221 1.174094 -0.003466728 3.3196310 0.008106343 3.5229139 10 0.9488242 1.172296 -0.002598847 -1.8213984 0.005079332 4.3831247 11 0.9489510 1.172381 -0.002568260 -2.5198330 0.007764052 8.0798277 13 0.9470599 1.170208 -0.002271350 -0.4579617 0.005303231 2.8383550 14 0.9470971 1.170185 0.002401964 5.8528716 0.006213719 14.4215691 16 0.9470566 1.170126 -0.003188816 2.3901905 0.007375504 2.7893345 18 0.9464750 1.169233 0.002316612 0.2349410 0.005400238 3.5604910 19 0.9466667 1.169330 -0.002848368 -4.7562545 0.007461596 11.3538244 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 423.469 co2l1 = 0.963 co2l0 = 0.14" [1] "co2l0 = -140.34 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "210 out of 460 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "250 out of 1176 1-min values rejected as stack air" [1] "250 out of 1176 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"