[1] "2025-04-30 02:17:02 MDT" [1] "1701" "170120" "d020" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170120a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83160 63 [1] 83160 [1] 83160 [1] "testing skipping spike filter" [1] 83160 [1] 83160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:17:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.046, ave o2scale2 = 0.845" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.046, ave o2scale2 = 0.845" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:17:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:17:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:17:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:17:21 MDT" [1] "reading in recalculated plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1368 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:17:24 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 416.86 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.28 minutes" [1] "Average Cal: 7.28 minutes" [1] "Shortest Cal: 1.04 minutes" [1] "Longest Cal: 8.36 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 3 11 0.002850723 0.008629196 0.006472904 2 -17.29257 113.3384 3 3 12 20 0.009348814 0.015081076 0.014361883 2 -30.63472 216.3084 5 4 280 287 0.204368229 0.210110012 0.207950989 2 -17.28359 116.7031 6 2 288 296 0.210834086 0.216596528 0.214436524 2 -39.61176 222.1384 8 2 567 575 0.412577517 0.418357465 0.416178960 3 -39.70897 226.2088 9 4 576 584 0.419072338 0.424877373 0.422706593 3 -17.39809 112.8679 11 3 594 601 0.432111863 0.437231829 0.436864742 3 -30.72805 211.9718 13 4 853 861 0.620496412 0.626275087 0.624099868 2 -17.55613 115.5286 14 2 862 870 0.626999942 0.632781597 0.630605312 2 -39.87210 236.7633 16 2 1138 1145 0.829511979 0.834554109 0.832746836 3 -39.84983 228.8227 17 4 1146 1153 0.835279398 0.840331395 0.838541276 3 -17.53117 110.1179 18 3 1154 1158 0.844682060 0.847598785 0.848317718 3 -30.88990 191.5185 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9581991 1.185574 0.0017208918 0.8928770 0.005993750 6.1532999 3 0.9582109 1.185719 -0.0011343864 0.8041864 0.004611729 0.8544368 5 0.9573526 1.184886 -0.0012860536 0.4922511 0.003193821 4.8740402 6 0.9571098 1.184668 -0.0039058089 -0.1808076 0.008896938 5.2982402 8 0.9572615 1.184748 0.0002137896 -0.7290202 0.004084533 3.7494951 9 0.9572030 1.184547 0.0026871699 -1.2392205 0.007734095 5.0654778 11 0.9570859 1.184368 -0.0024003810 -3.6473171 0.005176935 2.7265854 13 0.9560254 1.182631 -0.0014051481 0.9225089 0.006461726 5.1931266 14 0.9561739 1.182752 -0.0052346437 0.1051744 0.012536450 2.6476015 16 0.9550321 1.180974 -0.0029992025 -0.7255370 0.006031385 5.1838753 17 0.9550555 1.181005 0.0011156979 -0.1112232 0.004953324 0.3657919 18 0.9548844 1.180803 -0.0024011914 -20.6579195 0.002657781 22.4555513 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 422.95 co2l1 = 0.964 co2l0 = 0.136" [1] "co2l0 = -141.42 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "58 out of 150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "92 out of 1217 1-min values rejected as stack air" [1] "92 out of 1217 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"