[1] "2025-04-30 02:16:36 MDT" [1] "1701" "170119" "d019" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170119a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82903 63 [1] 82903 [1] 82903 [1] "testing skipping spike filter" [1] 82903 [1] 82903 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:16:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.045, ave o2scale2 = 0.846" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "12 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.045, ave o2scale2 = 0.846" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:16:40 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:16:40 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:16:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:16:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1367 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:16:56 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 427.21 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.28 minutes" [1] "Average Cal: 7.74 minutes" [1] "Shortest Cal: 2.19 minutes" [1] "Longest Cal: 9.35 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [3,] 6 7 [4,] 8 10 [5,] 11 12 [6,] 13 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 3 4 12 0.003070689 0.008811285 0.008093644 1 -30.80639 211.7109 4 3 218 227 0.163845341 0.170259635 0.169190328 3 -30.84132 213.8939 5 2 228 237 0.170978675 0.177469416 0.174952828 3 -39.81867 233.3568 6 4 238 247 0.178183681 0.184654948 0.182130277 3 -17.49397 109.3602 7 5 248 257 0.185374306 0.191858131 0.190770978 NA -19.64763 111.9371 9 4 506 513 0.372472656 0.377547743 0.375729032 2 -17.39464 112.5615 10 2 514 522 0.378265654 0.384034520 0.381874148 2 -39.71279 233.7842 12 2 794 801 0.580480237 0.585504225 0.583715683 3 -39.69584 237.1971 13 4 802 810 0.586223640 0.591963976 0.589808825 3 -17.36966 115.8004 14 3 811 819 0.592700231 0.598456684 0.597739805 3 -30.70228 206.7058 16 4 1082 1090 0.787829948 0.793578328 0.791426926 2 -17.36766 114.6347 17 2 1091 1099 0.794289034 0.800050637 0.797890728 2 -39.68623 228.3883 20 2 1363 1367 0.996356539 0.999249971 0.998524392 1 -39.59656 232.0420 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9552389 1.179139 -0.0022118856 -2.2812361 0.0063651593 2.476240 4 0.9558707 1.179894 0.0001958158 -2.3810276 0.0102983636 4.932753 5 0.9558721 1.179935 0.0004196866 2.1836236 0.0038090221 11.831043 6 0.9558445 1.179918 0.0053315284 -2.7835482 0.0140749746 10.176124 7 0.9559551 1.180025 -0.0012104095 0.8857505 0.0008838835 3.038528 9 0.9569599 1.181500 -0.0011071574 -2.6443879 0.0033502371 8.197040 10 0.9571404 1.181688 -0.0026150170 0.2984469 0.0064291728 4.948561 12 0.9578295 1.182966 -0.0033250046 2.5270587 0.0066147031 5.711689 13 0.9577981 1.182970 0.0023255209 -0.8103315 0.0055133429 5.852767 14 0.9578764 1.182979 -0.0008262427 -3.9263446 0.0026906128 4.050411 16 0.9585389 1.184223 -0.0009868405 0.5604798 0.0028923519 2.194010 17 0.9586632 1.184353 -0.0018579678 1.4743765 0.0053639317 4.178947 20 0.9582025 1.185663 -0.0045349627 -1.3233550 0.0048100643 1.415142 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 422.922 co2l1 = 0.963 co2l0 = 0.137" [1] "co2l0 = -140.15 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "303 out of 405 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "102 out of 1175 1-min values rejected as stack air" [1] "102 out of 1175 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"