[1] "2025-04-30 02:16:09 MDT" [1] "1701" "170118" "d018" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170118a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83520 63 [1] 83520 [1] 83520 [1] "testing skipping spike filter" [1] 83520 [1] 83520 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:16:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.049, ave o2scale2 = 0.85" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "9 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.049, ave o2scale2 = 0.85" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "9 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:16:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:16:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:16:26 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:16:28 MDT" [1] "reading in recalculated plot titles" [1] "Removed 9 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1381 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:16:30 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523.1" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 429.92 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.25 minutes" [1] "Average Cal: 7.89 minutes" [1] "Shortest Cal: 4.11 minutes" [1] "Longest Cal: 8.32 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 217 225 0.1578830 0.1636157 0.1614573 3 -39.75243 223.2776 3 4 226 234 0.1643254 0.1700115 0.1678760 3 -17.43157 112.5557 5 3 244 252 0.1771649 0.1828976 0.1821792 3 -30.75639 215.6018 7 4 506 514 0.3659488 0.3716690 0.3695174 2 -17.45489 115.8025 8 2 515 523 0.3723812 0.3781048 0.3759517 2 -39.77208 233.3414 10 2 796 804 0.5743197 0.5800491 0.5779052 3 -39.78300 230.1497 11 4 805 813 0.5807727 0.5865197 0.5843563 3 -17.45125 116.9380 12 3 814 821 0.5872370 0.5922735 0.5919143 3 -30.78595 210.4775 14 4 1083 1091 0.7822972 0.7880365 0.7858850 2 -17.44406 106.8981 15 2 1092 1100 0.7887616 0.7945382 0.7923640 2 -39.77440 232.1529 18 2 1368 1376 0.9902347 0.9959410 0.9937985 2 -39.78966 218.0520 19 4 1377 1381 0.9966564 0.9995114 0.9988005 2 -17.46710 117.4216 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9531776 1.175293 -0.0022203517 1.08574813 0.005026677 7.1954082 3 0.9531806 1.175223 0.0007154546 0.12326932 0.003878599 2.3471948 5 0.9533190 1.175450 0.0002252414 0.19381628 0.004358558 0.5133919 7 0.9535853 1.176179 0.0011361242 0.03678836 0.003630153 13.4352746 8 0.9536445 1.176212 -0.0020136441 0.99297053 0.006424412 2.5796296 10 0.9526805 1.175347 -0.0015890104 1.33687424 0.003963045 7.4607543 11 0.9526276 1.175231 0.0030695014 1.10241199 0.008925546 3.9378660 12 0.9528206 1.175464 -0.0013655518 1.85822407 0.004313753 1.3592398 14 0.9541506 1.177191 -0.0017297579 -2.89768723 0.004095380 9.2538297 15 0.9542754 1.177418 -0.0042503725 -3.80668399 0.009873540 8.7461377 18 0.9551750 1.178966 -0.0005148423 1.32853363 0.002742380 11.0272780 19 0.9551874 1.178929 0.0056451997 -13.17117955 0.006130206 13.5026693 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 422.976 co2l1 = 0.963 co2l0 = 0.194" [1] "co2l0 = -141.78 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "63 out of 240 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "177 out of 1213 1-min values rejected as stack air" [1] "177 out of 1213 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"