[1] "2025-04-30 02:15:03 MDT" [1] "1701" "170115" "d015" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170115a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83280 63 [1] 83280 [1] 83280 [1] "testing skipping spike filter" [1] 83280 [1] 83280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:15:07 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.049, ave o2scale2 = 0.852" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "44 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.049, ave o2scale2 = 0.852" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "44 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:15:07 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:15:07 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:15:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:15:20 MDT" [1] "reading in recalculated plot titles" [1] "Removed 44 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1343 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:15:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 418.38 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.26 minutes" [1] "Average Cal: 8.13 minutes" [1] "Shortest Cal: 6.26 minutes" [1] "Longest Cal: 8.42 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 133 141 0.09601473 0.1016973 0.09956899 2 -17.06301 114.5678 3 2 142 150 0.10240723 0.1080903 0.10596151 2 -39.38512 235.5147 6 2 419 427 0.30402963 0.3098115 0.30763965 3 -39.43079 223.1580 7 4 428 436 0.31054167 0.3163110 0.31414241 3 -17.10997 118.1262 8 3 437 445 0.31704187 0.3228125 0.32208757 3 -30.45015 216.4597 10 4 700 708 0.51253539 0.5183830 0.51619473 2 -17.08480 122.8067 11 2 709 715 0.52057604 0.5249206 0.52348406 2 -39.39329 227.1962 13 2 958 966 0.72075006 0.7265113 0.72435123 3 -39.66634 221.5035 14 4 967 975 0.72722405 0.7329612 0.73080816 3 -17.35338 118.3421 16 3 985 993 0.74012459 0.7458520 0.74513910 3 -30.71179 210.6638 18 4 1246 1254 0.92926768 0.9350569 0.93288486 2 -17.42096 117.8599 19 2 1255 1263 0.93577833 0.9415116 0.93935062 2 -39.74851 225.6680 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9552393 1.175237 0.0002949811 -2.78724816 0.003123631 7.066320 3 0.9553214 1.175290 -0.0037458304 0.16725253 0.010145647 8.488858 6 0.9541350 1.173751 -0.0016347035 0.02545692 0.003774030 3.990924 7 0.9540431 1.173700 0.0007946144 1.05031296 0.004904672 9.494442 8 0.9541461 1.173751 -0.0018219701 6.67028964 0.005153485 7.048931 10 0.9538316 1.173383 0.0038004486 -0.19419623 0.010550994 5.197960 11 0.9542046 1.173961 0.0010568366 0.28115484 0.002205993 2.357597 13 0.9526344 1.172514 -0.0043782564 1.96935045 0.009891591 6.029996 14 0.9524671 1.172272 0.0017440040 1.56550558 0.004801452 10.618071 16 0.9524366 1.172256 -0.0024534303 3.01448656 0.007544979 3.091317 18 0.9520902 1.171981 -0.0010513640 1.30959256 0.002449186 4.116758 19 0.9521807 1.172048 -0.0037483022 -2.22887999 0.011376570 7.127204 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 422.749 co2l1 = 0.963 co2l0 = 0.076" [1] "co2l0 = -143.85 co2l1 = 0.233" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "118 out of 305 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "187 out of 1167 1-min values rejected as stack air" [1] "187 out of 1167 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"