[1] "2025-04-30 02:14:41 MDT" [1] "1701" "170114" "d014" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170114a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83196 63 [1] 83196 [1] 83196 [1] "testing skipping spike filter" [1] 83196 [1] 83196 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:14:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.044, ave o2scale2 = 0.849" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "36 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.044, ave o2scale2 = 0.849" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "38 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:14:45 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:14:45 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:14:54 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:14:55 MDT" [1] "reading in recalculated plot titles" [1] "Removed 38 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1347 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:14:58 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 422.52 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.26 minutes" [1] "Average Cal: 8.36 minutes" [1] "Shortest Cal: 7.17 minutes" [1] "Longest Cal: 9.58 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 8 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 73 80 0.05391418 0.05889563 0.05711546 2 -16.91864 102.6562 3 2 81 89 0.05960501 0.06531276 0.06318164 2 -39.23870 228.8876 5 2 355 363 0.26134175 0.26709262 0.26495386 3 -39.23637 223.7127 6 4 364 372 0.26780379 0.27352940 0.27139263 3 -16.90751 113.3850 7 3 373 381 0.27424245 0.27995689 0.27924595 3 -30.25410 209.7159 9 3 626 635 0.47092734 0.47758044 0.47647056 3 -30.26842 217.1117 10 2 636 645 0.47831782 0.48496250 0.48237873 3 -39.25562 230.2168 11 4 646 655 0.48568776 0.49212749 0.48961955 3 -16.92357 109.7141 12 5 656 665 0.49283880 0.49923614 0.49817221 NA -18.96763 102.4923 14 4 913 921 0.67939792 0.68509418 0.68296015 2 -16.80423 116.9145 15 2 922 929 0.68580370 0.69078591 0.68900394 2 -39.11531 228.8900 17 2 1194 1202 0.88790911 0.89368215 0.89152893 3 -38.96546 232.3354 18 4 1203 1211 0.89440926 0.90017830 0.89800006 3 -16.65383 109.6394 19 3 1212 1219 0.90091317 0.90594583 0.90558490 3 -30.00013 206.7723 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9588011 1.179078 1.271494e-03 -0.96002839 0.004700801 4.186573 3 0.9588063 1.179166 -2.931008e-03 -1.21759893 0.009076313 3.090883 5 0.9582334 1.178369 -3.633913e-03 -0.19357288 0.008196322 5.104038 6 0.9581081 1.178174 -1.101861e-03 1.10874567 0.006741452 3.826984 7 0.9580633 1.178254 -9.341008e-05 -3.42035360 0.002431043 3.502903 9 0.9577697 1.177816 -1.345211e-03 3.56115512 0.004288787 5.212579 10 0.9577793 1.177922 -2.222850e-03 -0.12242800 0.007495385 2.987651 11 0.9577080 1.177864 4.779088e-03 -1.43718137 0.012715615 4.375691 12 0.9577714 1.177962 -2.447881e-03 -2.51102901 0.001767767 4.392178 14 0.9573631 1.177437 -2.549011e-03 -1.25107045 0.006001054 4.885192 15 0.9574823 1.177564 -2.183538e-03 0.93280075 0.005230768 2.434161 17 0.9568724 1.176804 -9.897971e-05 1.41513394 0.004430725 5.212732 18 0.9567483 1.176710 3.209205e-03 -0.02209365 0.008479503 2.881838 19 0.9567665 1.176737 -7.572370e-04 -10.22614441 0.003004424 7.516600 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 422.392 co2l1 = 0.963 co2l0 = 0.093" [1] "co2l0 = -140.07 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "92 out of 235 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "143 out of 1168 1-min values rejected as stack air" [1] "143 out of 1168 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"