[1] "2025-04-30 02:14:23 MDT" [1] "1701" "170113" "d013" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170113a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 69581 63 [1] 69581 [1] 69581 [1] "testing skipping spike filter" [1] 69581 [1] 69581 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:14:27 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.043, ave o2scale2 = 0.849" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "67 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.043, ave o2scale2 = 0.849" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "66 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:14:27 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:14:27 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:14:33 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:14:34 MDT" [1] "reading in recalculated plot titles" [1] "Removed 66 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 205 row(s) with variable TFCELL" [1] "TEMP: 886 181 TRUE" [1] "Removed 181 row(s) with -999.99 for a Licor jog SD" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:14:36 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.962 co2off = 425.27 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.29 minutes" [1] "Average Cal: 7.13 minutes" [1] "Shortest Cal: 5.21 minutes" [1] "Longest Cal: 8.39 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 3 1 6 0.0009006655 0.00451956 0.005245284 1 -28.52064 185.7927 3 4 240 248 0.1939926215 0.19981875 0.197643928 2 -15.22547 117.9687 4 2 249 257 0.2005360532 0.20634444 0.204160975 2 -37.56559 230.6556 7 4 513 519 0.6127600116 0.61707257 0.615628571 2 -15.29191 117.6625 8 2 520 528 0.6177892940 0.62356412 0.621401327 2 -37.65634 234.6257 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 0.9572133 1.175520 -0.0040616985 -17.67697737 0.005587928 26.125019 3 0.9586692 1.177076 -0.0010159265 -0.03849596 0.002406008 4.083700 4 0.9586742 1.177062 -0.0044767221 0.62429116 0.010839853 3.826403 7 0.9599087 1.179220 0.0008538653 0.82349116 0.002661062 2.669724 8 0.9599225 1.179299 -0.0054877407 0.82007620 0.014723089 4.598149 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 420.817 co2l1 = 0.962 co2l0 = 0" [1] "co2l0 = -139.7 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "18 out of 58 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "40 out of 623 1-min values rejected as stack air" [1] "40 out of 623 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"