[1] "2025-04-30 02:13:40 MDT"
[1] "1701"   "170109" "d009"  
[1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170109a.hr"
[1] "reading in hr file header"
Read 27 items
[1] "Parsing HR flags"
[1] "Doing high rate calculations (mean, sd, slope, shape)"
[1] 41245    63
[1] 41245
[1] 41245
[1] "testing skipping spike filter"
[1] 41245
[1] 41245
[1] "recalculating jog averages"
[1] "recalculating jog sds"
[1] "recalculating jog slopes"
[1] "Parsing MR flags"
[1] "Calculating derived concentration values"
[1] "2025-04-30 02:13:42 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 1.059, ave o2scale2 = 0.862"
[1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000"
[1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000"
[1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000"
[1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000"
[1] "93 MR delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.059, ave o2scale2 = 0.862"
[1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000"
[1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000"
[1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000"
[1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000"
[1] "93 RC delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "2025-04-30 02:13:43 MDT"
[1] "Plotting 1-second data"
[1] "2025-04-30 02:13:43 MDT"
[1] "reading in high-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2025-04-30 02:13:46 MDT"
[1] "reading in medium-rate plot titles"
[1] "Plotting recalculated 1-minute data"
[1] "2025-04-30 02:13:47 MDT"
[1] "reading in recalculated plot titles"
[1] "Removed 94 row(s) with NAs in them ( most likely because WTDIFF > 200 )"
[1] "TEMP: 593 593 TRUE"
[1] "Removed 593 row(s) with -999.99 for a Licor jog SD"
[1] "ALL DATA REMOVED"
[1] "making html"