[1] "2025-04-30 02:12:38 MDT" [1] "1701" "170106" "d006" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170106a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83100 63 [1] 83100 [1] 83100 [1] "testing skipping spike filter" [1] 83100 [1] 83100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:12:42 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.064, ave o2scale2 = 0.861" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "6 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.064, ave o2scale2 = 0.861" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:12:43 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:12:43 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:12:57 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:12:59 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1376 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:13:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 414.05 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.31 minutes" [1] "Average Cal: 8.16 minutes" [1] "Shortest Cal: 7.27 minutes" [1] "Longest Cal: 8.38 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 142 149 0.1044135 0.1094738 0.1076674 3 -35.16498 230.7157 3 4 150 158 0.1102022 0.1159159 0.1137731 3 -12.86679 120.6892 4 3 159 166 0.1166324 0.1216822 0.1213250 3 -26.21401 226.7222 6 4 427 435 0.3116626 0.3174379 0.3152711 2 -12.77492 110.9836 7 2 436 444 0.3181604 0.3239157 0.3217501 2 -35.12663 233.0571 9 2 712 720 0.5196622 0.5254346 0.5232760 3 -35.20765 226.7091 10 4 721 729 0.5261518 0.5319709 0.5298012 3 -12.91338 117.7105 12 3 739 747 0.5391995 0.5449376 0.5442154 3 -26.23581 216.5914 14 4 1000 1008 0.7276049 0.7333642 0.7312021 2 -12.87468 115.4915 15 2 1009 1017 0.7341011 0.7398685 0.7377095 2 -35.19241 229.6643 17 2 1288 1296 0.9358128 0.9415850 0.9394159 3 -35.13896 230.3042 18 4 1297 1305 0.9423073 0.9480761 0.9459099 3 -12.86280 109.3782 19 3 1306 1314 0.9487952 0.9545986 0.9538687 3 -26.17089 200.8878 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9410860 1.164571 -0.0022942844 -0.14384437 0.005910487 7.639068 3 0.9409665 1.164377 0.0012247747 6.06120078 0.003863703 16.692574 4 0.9409361 1.164356 -0.0008207121 7.34098150 0.002881356 5.339446 6 0.9397236 1.162420 -0.0045675946 -1.04286248 0.010895796 6.433502 7 0.9397981 1.162393 -0.0058233015 1.16561052 0.013662669 5.104910 9 0.9389487 1.160275 -0.0049769611 1.59397910 0.011234935 9.219687 10 0.9388852 1.160208 0.0009459122 -2.47001449 0.005098381 7.366729 12 0.9389258 1.160049 0.0012404775 -6.28923453 0.003183003 6.634536 14 0.9394905 1.158825 -0.0026065960 0.38434866 0.006345974 3.866649 15 0.9396704 1.158878 -0.0020106616 -1.38017499 0.005796332 4.359282 17 0.9407329 1.158924 -0.0032671027 -0.09555882 0.008753337 4.071050 18 0.9407470 1.158829 0.0013640134 -1.84833462 0.003579533 9.721085 19 0.9408188 1.158960 0.0021834354 2.39337102 0.005680022 2.520728 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.565 co2l1 = 0.964 co2l0 = 0.062" [1] "co2l0 = -141.4 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "335 out of 560 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "225 out of 1210 1-min values rejected as stack air" [1] "225 out of 1210 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"