[1] "2025-04-30 02:12:11 MDT" [1] "1701" "170105" "d005" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170105a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83220 63 [1] 83220 [1] 83220 [1] "testing skipping spike filter" [1] 83220 [1] 83220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:12:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.056, ave o2scale2 = 0.854" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "21 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.056, ave o2scale2 = 0.854" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "21 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:12:15 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:12:15 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:12:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:12:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 21 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1365 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:12:34 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 418.36 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.28 minutes" [1] "Average Cal: 8.22 minutes" [1] "Shortest Cal: 7.27 minutes" [1] "Longest Cal: 8.4 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 85 93 0.06311186 0.06882390 0.06668304 2 -12.48146 108.8276 3 2 94 102 0.06954282 0.07531337 0.07315430 2 -34.78979 224.2109 5 2 370 378 0.27119065 0.27698377 0.27481853 3 -34.90222 211.4909 6 4 379 387 0.27769826 0.28343194 0.28127932 3 -12.62312 115.4318 8 3 397 405 0.29056756 0.29633249 0.29560030 3 -25.95024 223.2038 10 4 655 663 0.47911997 0.48485694 0.48270067 2 -12.72929 117.7133 11 2 664 672 0.48557934 0.49138628 0.48920388 2 -35.03117 230.4940 14 4 951 959 0.69372260 0.69946409 0.69730749 2 -12.86000 114.6512 15 3 960 968 0.70017335 0.70593330 0.70520946 2 -26.18785 210.8545 17 4 1222 1229 0.89597766 0.90102514 0.89923925 2 -12.66550 118.6190 18 2 1230 1238 0.90173892 0.90747920 0.90531955 2 -35.01090 229.1351 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9522528 1.177851 -0.0041828615 -2.9606321 0.010226836 8.864588 3 0.9522332 1.177876 -0.0038565686 -0.5811768 0.010922362 8.129962 5 0.9494694 1.174867 -0.0029604736 -2.9310655 0.006953984 17.381096 6 0.9494226 1.174684 0.0005920314 5.7576002 0.003988987 20.135611 8 0.9494601 1.174529 -0.0010536329 6.8293825 0.003917680 8.436026 10 0.9471901 1.171745 -0.0019388401 3.2452944 0.005222487 8.872906 11 0.9472668 1.171774 -0.0037415911 -0.3602840 0.009653685 3.969965 14 0.9449829 1.168959 0.0020794296 -0.4062463 0.007307691 3.005275 15 0.9451221 1.168970 -0.0004627613 13.1083118 0.001290418 14.513274 17 0.9432751 1.166904 -0.0038684023 -10.1792266 0.008090407 20.957656 18 0.9432075 1.166809 -0.0071241421 -0.8998596 0.016852333 3.149079 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 418.39 co2l1 = 0.964 co2l0 = 0.047" [1] "co2l0 = -142.43 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "156 out of 629 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "473 out of 1189 1-min values rejected as stack air" [1] "473 out of 1189 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"