[1] "2025-04-30 02:11:44 MDT" [1] "1701" "170104" "d004" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170104a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83220 63 [1] 83220 [1] 83220 [1] "testing skipping spike filter" [1] 83220 [1] 83220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:11:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.043, ave o2scale2 = 0.844" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.043, ave o2scale2 = 0.844" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:11:48 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:11:48 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:12:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:12:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 17 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1370 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:12:06 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.968 co2off = 422.11 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.28 minutes" [1] "Average Cal: 8.09 minutes" [1] "Shortest Cal: 6.27 minutes" [1] "Longest Cal: 8.37 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 29 36 0.02249207 0.02824016 0.02643302 3 -34.12182 221.5626 3 4 37 43 0.03039074 0.03474236 0.03329355 3 -11.86936 98.5152 5 3 53 61 0.04201655 0.04777743 0.04706223 3 -25.21363 209.4035 7 4 314 321 0.23112908 0.23620486 0.23438705 2 -11.90877 113.0293 8 2 322 330 0.23691490 0.24265295 0.24049983 2 -34.18815 227.8452 10 2 595 603 0.43851803 0.44430197 0.44212084 3 -34.24649 225.8887 11 4 604 612 0.44502749 0.45076930 0.44861317 3 -11.97389 107.7867 12 3 613 621 0.45148932 0.45725793 0.45654056 3 -25.30749 215.1629 14 4 884 892 0.64663475 0.65238015 0.65022493 2 -12.18165 117.5860 15 2 893 901 0.65310747 0.65885148 0.65670811 2 -34.49092 228.5591 18 2 1170 1178 0.85515414 0.86091053 0.85874492 3 -34.72808 230.9455 19 4 1179 1187 0.86163024 0.86739436 0.86523514 3 -12.44029 112.6187 20 3 1188 1196 0.86811531 0.87383747 0.87312276 3 -25.76523 218.1086 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9619043 1.188974 -0.0037861935 5.9138178 0.007430569 16.515221 3 0.9618225 1.188961 -0.0059741072 -1.6459109 0.010152971 11.836917 5 0.9618197 1.189154 -0.0009570808 0.1867272 0.004928526 5.541762 7 0.9609845 1.188177 0.0011200157 3.8660754 0.004648364 9.263624 8 0.9610750 1.188256 -0.0019623872 -1.4729935 0.006279499 7.740039 10 0.9596967 1.186645 -0.0004731218 1.6840344 0.005424965 6.283127 11 0.9594851 1.186394 -0.0007625039 -1.1488808 0.006987779 3.435931 12 0.9594502 1.186460 -0.0036000076 -8.6256882 0.008548531 8.983371 14 0.9575865 1.184162 -0.0038313765 4.6115972 0.009928708 14.386939 15 0.9575060 1.184152 -0.0018507519 -0.6477537 0.006779710 5.336491 18 0.9555270 1.181517 0.0008378479 0.4473868 0.004293848 3.676029 19 0.9554260 1.181355 0.0017318193 -0.5018286 0.005378719 3.002570 20 0.9553735 1.181416 -0.0013636470 -1.8583713 0.003492685 1.918302 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 417.826 co2l1 = 0.965 co2l0 = 0.01" [1] "co2l0 = -140.01 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "223 out of 275 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "52 out of 1182 1-min values rejected as stack air" [1] "52 out of 1182 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"