[1] "2025-04-30 02:10:47 MDT" [1] "1701" "170102" "d002" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170102a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83280 63 [1] 83280 [1] 83280 [1] "testing skipping spike filter" [1] 83280 [1] 83280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:10:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.05, ave o2scale2 = 0.849" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "31 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.05, ave o2scale2 = 0.849" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "31 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:10:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:10:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:11:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:11:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 31 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1355 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:11:11 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.968 co2off = 416.93 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.3 minutes" [1] "Average Cal: 8.16 minutes" [1] "Shortest Cal: 7.19 minutes" [1] "Longest Cal: 8.38 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 199 206 0.1493140 0.1543105 0.1525246 2 -10.82965 103.7910 3 2 207 215 0.1550497 0.1608377 0.1586671 2 -33.11099 225.4208 7 4 483 491 0.3632296 0.3689775 0.3668169 2 -10.85271 115.2390 8 3 492 500 0.3696887 0.3754580 0.3747147 2 -24.17701 205.3361 10 4 758 766 0.5648721 0.5706318 0.5684739 2 -10.96807 124.7290 11 2 767 775 0.5713414 0.5770998 0.5749344 2 -33.25585 240.3674 13 2 1047 1055 0.7735080 0.7793255 0.7771488 3 -33.53084 226.2320 14 4 1056 1064 0.7800462 0.7858536 0.7836756 3 -11.26111 111.3054 16 3 1074 1082 0.7930625 0.7988199 0.7981012 3 -24.58018 214.9784 18 4 1331 1339 0.9816488 0.9874092 0.9852374 2 -11.40373 123.0861 19 2 1340 1347 0.9881280 0.9931520 0.9913632 2 -33.68572 227.2165 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9523972 1.176827 0.0001596682 6.6191114 0.001270253 15.502127 3 0.9525392 1.177108 -0.0026489986 0.5711886 0.006333240 3.394314 7 0.9533845 1.177720 0.0013681712 -0.6733430 0.004145265 5.773526 8 0.9533005 1.177751 -0.0017965617 5.6208809 0.006537893 6.183915 10 0.9531523 1.177959 -0.0015618014 -2.5489144 0.004183989 10.475328 11 0.9531851 1.178093 -0.0032980717 0.2624517 0.007901646 13.533635 13 0.9530243 1.177944 -0.0035574819 4.2918582 0.008448362 13.198733 14 0.9529370 1.177851 -0.0001976579 5.3096752 0.004766653 16.062211 16 0.9530438 1.177898 -0.0012605584 1.7596842 0.003046392 1.818714 18 0.9526795 1.177702 -0.0021362697 -1.6626449 0.005499493 13.286965 19 0.9527949 1.177813 -0.0023435117 2.9168280 0.006989473 8.029184 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.852 co2l1 = 0.965 co2l0 = 0.088" [1] "co2l0 = -142.72 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "30 out of 35 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "5 out of 1179 1-min values rejected as stack air" [1] "5 out of 1179 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"