[1] "2025-04-30 02:10:19 MDT" [1] "1701" "170101" "d001" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/170101a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83220 63 [1] 83220 [1] 83220 [1] "testing skipping spike filter" [1] 83220 [1] 83220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 02:10:23 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 1.044, ave o2scale2 = 0.847" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "69 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 1.044, ave o2scale2 = 0.847" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "68 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 02:10:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 02:10:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 02:10:37 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 02:10:39 MDT" [1] "reading in recalculated plot titles" [1] "Removed 68 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1318 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 02:10:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.67 O2 = -523" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.17 O2 = -648" [1] "position 4 cylinder CB08905 description: LT CO2 = 404.34 O2 = -653.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = 398.16 O2 = -1524.9" [1] "Nominal linear calibrations:" [1] "co2scl = 0.967 co2off = 423 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.27 minutes" [1] "Average Cal: 7.2 minutes" [1] "Shortest Cal: 2.08 minutes" [1] "Longest Cal: 8.48 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 147 155 0.1077922 0.1135499 0.1113799 3 -32.44647 228.9560 3 4 156 164 0.1142718 0.1199918 0.1178491 3 -10.17112 111.6566 4 3 165 172 0.1207032 0.1257354 0.1253794 3 -23.45724 206.4145 6 4 433 436 0.3195260 0.3216706 0.3213121 2 -10.09019 109.4754 7 2 437 444 0.3223797 0.3273952 0.3255943 2 -32.36500 220.9737 9 2 713 721 0.5241045 0.5298833 0.5277159 2 -32.47092 224.9830 10 4 722 730 0.5306036 0.5363622 0.5342034 2 -10.20003 111.1942 13 4 981 989 0.7323300 0.7381420 0.7359515 2 -10.46820 113.6631 14 2 990 998 0.7388615 0.7446014 0.7424556 2 -32.76804 224.4052 16 2 1253 1258 0.9405088 0.9463992 0.9441855 3 -33.00649 246.1499 17 4 1259 1264 0.9471181 0.9529251 0.9507638 3 -10.72903 118.7149 18 3 1265 1272 0.9536476 0.9587127 0.9583469 3 -24.04202 214.0380 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 0.9612715 1.183039 -0.0030451450 7.1705264 0.007077773 17.530324 3 0.9612377 1.183147 0.0020736031 6.3836119 0.006872294 15.487553 4 0.9613115 1.183252 0.0037454805 10.1453786 0.008205507 7.353811 6 0.9603502 1.183649 0.0003632108 -2.7710394 0.000265165 2.023020 7 0.9604540 1.183803 -0.0024623798 0.6181734 0.005808399 6.407786 9 0.9588467 1.182288 -0.0040634658 2.4818375 0.010001218 12.066186 10 0.9585735 1.182008 0.0018874352 -1.1678846 0.004917133 7.530821 13 0.9555364 1.178851 -0.0018321570 -1.4363649 0.005110425 10.311070 14 0.9554136 1.178783 -0.0041490025 -4.3838464 0.009910528 12.979778 16 0.9524437 1.175980 -0.0038786265 3.6859916 0.012436969 13.194361 17 0.9522424 1.175798 0.0030015483 -3.4999112 0.009338246 10.815315 18 0.9520842 1.175736 -0.0015474852 -4.5258504 0.004623254 3.372140 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 416.141 co2l1 = 0.965 co2l0 = 0.107" [1] "co2l0 = -141.02 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "24 out of 40 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "16 out of 1169 1-min values rejected as stack air" [1] "16 out of 1169 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"